umcg.genetica.io.trityper

Class TriTyperSNPMappings

java.lang.Object

umcg.genetica.io.trityper.TriTyperSNPMappings

public class TriTyperSNPMappings
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
TriTyperSNPMappings(String loc)
TriTyperSNPMappings(String loc, Set<String> querySNPs)
TriTyperSNPMappings(String loc, String querySNPFile)

Method Summary

Modifier and Type	Method and Description
Byte	getChr(Integer id)
Byte	getChr(String snp)
Integer	getChrPos(Integer id)
Integer	getChrPos(String snp)
int	getNumSNPs()
String	getSNP(Integer id)
Integer	getSNPId(String snp)
String[]	getSNPs()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TriTyperSNPMappings

public TriTyperSNPMappings(String loc)
                    throws IOException

Throws:

IOException

TriTyperSNPMappings

public TriTyperSNPMappings(String loc,
                           String querySNPFile)
                    throws IOException

Throws:

IOException

TriTyperSNPMappings

public TriTyperSNPMappings(String loc,
                           Set<String> querySNPs)
                    throws IOException

Throws:

IOException

Method Detail

getChr

public Byte getChr(String snp)

getChrPos

public Integer getChrPos(String snp)

getChr

public Byte getChr(Integer id)

getChrPos

public Integer getChrPos(Integer id)

getSNP

public String getSNP(Integer id)

getSNPId

public Integer getSNPId(String snp)

getSNPs

public String[] getSNPs()

getNumSNPs

public int getNumSNPs()