umcg.genetica.io.trityper

Class WGAFileMatrixGenotype

java.lang.Object

umcg.genetica.io.trityper.WGAFileMatrixGenotype

public class WGAFileMatrixGenotype
extends Object

Author:

ludefranke

Field Summary

Fields

Modifier and Type	Field and Description
int	nrInds
int	nrSNPs

Constructor Summary

Constructors

Constructor and Description
WGAFileMatrixGenotype(int nrSNPs, int nrInds, File fileName, boolean readOnly) Creates a new instance of WGAFileMatrixGenotype

Method Summary

Modifier and Type	Method and Description
void	close()
byte	getAllele1(int snp, int ind)
byte	getAllele2(int snp, int ind)
void	setAllele1(int snp, int ind, byte value)
void	setAllele1(int snp, int ind, byte[] value)
void	setAllele2(int snp, int ind, byte value)
void	setAllele2(int snp, int ind, byte[] value)
void	setAlleles(int snp, byte[] alleles1, byte[] alleles2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nrSNPs

public int nrSNPs

nrInds

public int nrInds

Constructor Detail

WGAFileMatrixGenotype

public WGAFileMatrixGenotype(int nrSNPs,
                             int nrInds,
                             File fileName,
                             boolean readOnly)
                      throws IOException

Creates a new instance of WGAFileMatrixGenotype

Throws:

IOException

Method Detail

close

public void close()
           throws IOException

Throws:

IOException

getAllele1

public byte getAllele1(int snp,
                       int ind)
                throws IOException

Throws:

IOException

getAllele2

public byte getAllele2(int snp,
                       int ind)
                throws IOException

Throws:

IOException

setAllele1

public void setAllele1(int snp,
                       int ind,
                       byte value)
                throws IOException

Throws:

IOException

setAllele1

public void setAllele1(int snp,
                       int ind,
                       byte[] value)
                throws IOException

Throws:

IOException

setAllele2

public void setAllele2(int snp,
                       int ind,
                       byte value)
                throws IOException

Throws:

IOException

setAllele2

public void setAllele2(int snp,
                       int ind,
                       byte[] value)
                throws IOException

Throws:

IOException

setAlleles

public void setAlleles(int snp,
                       byte[] alleles1,
                       byte[] alleles2)
                throws IOException

Throws:

IOException