umcg.genetica.io.trityper

Class WGAFileMatrixImputedDosage

java.lang.Object

umcg.genetica.io.trityper.WGAFileMatrixImputedDosage

public class WGAFileMatrixImputedDosage
extends Object

Author:

ludefranke

Field Summary

Fields

Modifier and Type	Field and Description
int	nrInds
int	nrSNPs

Constructor Summary

Constructors

Constructor and Description
WGAFileMatrixImputedDosage(int nrSNPs, int nrInds, File fileName, boolean readOnly) Creates a new instance of WGAFileMatrixGenotype

Method Summary

Modifier and Type	Method and Description
void	close()
byte	getDosage(int snp, int ind)
void	setDosage(int snp, int ind, byte value)
void	setDosage(int snp, int ind, byte[] value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nrSNPs

public int nrSNPs

nrInds

public int nrInds

Constructor Detail

WGAFileMatrixImputedDosage

public WGAFileMatrixImputedDosage(int nrSNPs,
                                  int nrInds,
                                  File fileName,
                                  boolean readOnly)
                           throws IOException

Creates a new instance of WGAFileMatrixGenotype

Throws:

IOException

Method Detail

close

public void close()
           throws IOException

Throws:

IOException

getDosage

public byte getDosage(int snp,
                      int ind)
               throws IOException

Throws:

IOException

setDosage

public void setDosage(int snp,
                      int ind,
                      byte[] value)
               throws IOException

Throws:

IOException

setDosage

public void setDosage(int snp,
                      int ind,
                      byte value)
               throws IOException

Throws:

IOException