umcg.genetica.io.trityper

Class WGAFileMatrixRawData

java.lang.Object

umcg.genetica.io.trityper.WGAFileMatrixRawData

public class WGAFileMatrixRawData
extends Object

Author:

ludefranke

Field Summary

Fields

Modifier and Type	Field and Description
int	nrInds
int	nrSNPs

Constructor Summary

Constructors

Constructor and Description
WGAFileMatrixRawData(int nrSNPs, int nrInds, File fileName, boolean readOnly) Creates a new instance of WGAFileMatrixRawData

Method Summary

Modifier and Type	Method and Description
void	close()
byte	getGCScore(int snp, int ind)
byte	getR(int snp, int ind)
byte	getTheta(int snp, int ind)
void	setGCScore(int snp, int ind, byte[] value)
void	setR(int snp, int ind, byte[] value)
void	setTheta(int snp, int ind, byte[] value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nrSNPs

public int nrSNPs

nrInds

public int nrInds

Constructor Detail

WGAFileMatrixRawData

public WGAFileMatrixRawData(int nrSNPs,
                            int nrInds,
                            File fileName,
                            boolean readOnly)
                     throws IOException

Creates a new instance of WGAFileMatrixRawData

Throws:

IOException

Method Detail

close

public void close()
           throws IOException

Throws:

IOException

getGCScore

public byte getGCScore(int snp,
                       int ind)
                throws IOException

Throws:

IOException

getR

public byte getR(int snp,
                 int ind)
          throws IOException

Throws:

IOException

getTheta

public byte getTheta(int snp,
                     int ind)
              throws IOException

Throws:

IOException

setGCScore

public void setGCScore(int snp,
                       int ind,
                       byte[] value)
                throws IOException

Throws:

IOException

setR

public void setR(int snp,
                 int ind,
                 byte[] value)
          throws IOException

Throws:

IOException

setTheta

public void setTheta(int snp,
                     int ind,
                     byte[] value)
              throws IOException

Throws:

IOException