public class BinaryResultDataset extends Object
| Constructor and Description |
|---|
BinaryResultDataset(String location,
String name,
int permutation) |
| Modifier and Type | Method and Description |
|---|---|
void |
clearProbeObjects() |
void |
close() |
void |
closeMatrix() |
String |
getM_location() |
String |
getM_name() |
BinaryGZipFloatMatrix |
getMatrix() |
float |
getMaxfloat() |
int |
getMaxNrSamples() |
float |
getMinfloat() |
int |
getNumProbes() |
BinaryResultProbe[] |
getProbes() |
BinaryResultSNP[] |
getSnps() |
HashMap<String,BinaryResultProbe> |
getStringToProbe() |
HashMap<String,BinaryResultSNP> |
getStringToSNP() |
void |
openMatrix(int permutation) |
Float[] |
readSNPZScores(BinaryResultSNP snp) |
void |
setM_location(String m_location) |
void |
setM_name(String m_name) |
void |
setMaxfloat(float maxfloat) |
void |
setMinfloat(float minfloat) |
void |
setProbes(BinaryResultProbe[] probes) |
void |
setSnps(BinaryResultSNP[] snps) |
void |
setStringToProbe(HashMap<String,BinaryResultProbe> stringToProbe) |
void |
setStringToSNP(HashMap<String,BinaryResultSNP> stringToSNP) |
public BinaryResultDataset(String location, String name, int permutation) throws IOException
IOExceptionpublic void closeMatrix()
throws IOException
IOExceptionpublic void openMatrix(int permutation)
throws IOException
IOExceptionpublic String getM_name()
public void setM_name(String m_name)
m_name - the m_name to setpublic String getM_location()
public void setM_location(String m_location)
m_location - the m_location to setpublic BinaryResultSNP[] getSnps()
public void setSnps(BinaryResultSNP[] snps)
snps - the snps to setpublic HashMap<String,BinaryResultSNP> getStringToSNP()
public void setStringToSNP(HashMap<String,BinaryResultSNP> stringToSNP)
stringToSNP - the stringToSNP to setpublic BinaryResultProbe[] getProbes()
public void setProbes(BinaryResultProbe[] probes)
probes - the probes to setpublic HashMap<String,BinaryResultProbe> getStringToProbe()
public void setStringToProbe(HashMap<String,BinaryResultProbe> stringToProbe)
stringToProbe - the stringToProbe to setpublic BinaryGZipFloatMatrix getMatrix()
public int getNumProbes()
public int getMaxNrSamples()
public Float[] readSNPZScores(BinaryResultSNP snp) throws IOException, DataFormatException
IOExceptionDataFormatExceptionpublic float getMaxfloat()
public void setMaxfloat(float maxfloat)
maxfloat - the maxfloat to setpublic float getMinfloat()
public void setMinfloat(float minfloat)
minfloat - the minfloat to setpublic void clearProbeObjects()
public void close()
throws IOException
IOExceptionCopyright © 2015. All Rights Reserved.