umcg.genetica.io.trityper.bin

Class BinaryResultSNPSummary

java.lang.Object

umcg.genetica.io.trityper.bin.BinaryResultSNPSummary

public class BinaryResultSNPSummary
extends Object

Author:

harm-jan

Field Summary

Fields

Modifier and Type	Field and Description
static boolean	R
static boolean	W

Constructor Summary

Constructors

Constructor and Description
BinaryResultSNPSummary(String filename, boolean W)

Method Summary

Modifier and Type	Method and Description
void	close()
int	getMaxNrSamples()
BinaryResultSNP[]	readAllSNPs()
BinaryResultSNP	readNextSNP()
void	write(String snpname, byte snpchr, Integer snpchrpos, double HWE, double MAF, double CR, byte[] alleles, byte minorallele, byte alleleassessed, Integer numsamples, long gzipIndex)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

W

public static boolean W

R

public static boolean R

Constructor Detail

BinaryResultSNPSummary

public BinaryResultSNPSummary(String filename,
                              boolean W)
                       throws IOException

Throws:

IOException

Method Detail

close

public void close()
           throws IOException

Throws:

IOException

write

public void write(String snpname,
                  byte snpchr,
                  Integer snpchrpos,
                  double HWE,
                  double MAF,
                  double CR,
                  byte[] alleles,
                  byte minorallele,
                  byte alleleassessed,
                  Integer numsamples,
                  long gzipIndex)
           throws IOException

Throws:

IOException

readAllSNPs

public BinaryResultSNP[] readAllSNPs()
                              throws IOException

Throws:

IOException

readNextSNP

public BinaryResultSNP readNextSNP()
                            throws IOException

Throws:

IOException

getMaxNrSamples

public int getMaxNrSamples()