Uses of Class
umcg.genetica.io.trityper.SNP

Packages that use SNP

Package	Description
umcg.genetica.io.trityper
umcg.genetica.io.trityper.util

Uses of SNP in umcg.genetica.io.trityper

Methods in umcg.genetica.io.trityper that return SNP

Modifier and Type	Method and Description
SNP	TriTyperGenotypeData.getSNPObject(int d)

Methods in umcg.genetica.io.trityper with parameters of type SNP

Modifier and Type	Method and Description
void	BufferedSNPLoader.loadDosage(SNP snp)
void	SNPLoader.loadDosage(SNP snp)
void	BufferedSNPLoader.loadGenotypes(SNP snp)
void	SNPLoader.loadGenotypes(SNP snp)

Uses of SNP in umcg.genetica.io.trityper.util

Methods in umcg.genetica.io.trityper.util with parameters of type SNP

Modifier and Type	Method and Description
static Boolean[]	CompareAllelicDirections.compare(SNP[] snps)
Pair<Double,Double>	DetermineLD.getLD(SNP snpX, SNP snpY, TriTyperGenotypeData genotypeData, int individualsToInclude, boolean print)
double	DetermineLD.getRSquared(SNP snpX, SNP snpY, TriTyperGenotypeData genotypeData, int returnType, int individualsToInclude, boolean print)