Uses of Class
umcg.genetica.io.trityper.TriTyperGenotypeData

Packages that use TriTyperGenotypeData

Package	Description
umcg.genetica.gwas
umcg.genetica.io.trityper
umcg.genetica.io.trityper.converters
umcg.genetica.io.trityper.util

Uses of TriTyperGenotypeData in umcg.genetica.gwas

Constructors in umcg.genetica.gwas with parameters of type TriTyperGenotypeData

Constructor and Description
Dependifier(TriTyperGenotypeData dataset, SNPLoader loader)
Independifier(TriTyperGenotypeData genotypeData, SNPLoader snpLoader)

Uses of TriTyperGenotypeData in umcg.genetica.io.trityper

Methods in umcg.genetica.io.trityper that return TriTyperGenotypeData

Modifier and Type	Method and Description
TriTyperGenotypeData	TriTyperGeneticalGenomicsDataset.getGenotypeData()

Methods in umcg.genetica.io.trityper with parameters of type TriTyperGenotypeData

Modifier and Type	Method and Description
void	TriTyperGeneticalGenomicsDataset.setGenotypeData(TriTyperGenotypeData genotypeData)

Uses of TriTyperGenotypeData in umcg.genetica.io.trityper.converters

Methods in umcg.genetica.io.trityper.converters with parameters of type TriTyperGenotypeData

Modifier and Type	Method and Description
void	TriTyperToPedAndMapConverter.exportFamFile(TriTyperGenotypeData ds, String outdir)

Uses of TriTyperGenotypeData in umcg.genetica.io.trityper.util

Methods in umcg.genetica.io.trityper.util with parameters of type TriTyperGenotypeData

Modifier and Type	Method and Description
Pair<Double,Double>	DetermineLD.getLD(SNP snpX, SNP snpY, TriTyperGenotypeData genotypeData, int individualsToInclude, boolean print)
double	DetermineLD.getRSquared(SNP snpX, SNP snpY, TriTyperGenotypeData genotypeData, int returnType, int individualsToInclude, boolean print)