umcg.genetica.io.trityper.converters

Class PedAndMapToTriTyper

java.lang.Object

umcg.genetica.io.trityper.converters.PedAndMapToTriTyper

public class PedAndMapToTriTyper
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
PedAndMapToTriTyper()

Method Summary

Modifier and Type	Method and Description
void	importPEDFile(String[] mapFile, String mapFileDelimiter, int mapFileChrColumn, int mapFileChrPosColumn, int mapFileSNPColumn, String[] pedFile, String pedFileDelimiter, String outputDir, String[] casesToInclude)
void	importPEDFile(String dataLocation, String outputLocation)
void	importPEDFile(String dataLocation, String mapdelimiter, int chrcol, int chrpos, int snpcol, String peddelimiter, String outputLocation, String[] casesToInclude)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PedAndMapToTriTyper

public PedAndMapToTriTyper()

Method Detail

importPEDFile

public void importPEDFile(String[] mapFile,
                          String mapFileDelimiter,
                          int mapFileChrColumn,
                          int mapFileChrPosColumn,
                          int mapFileSNPColumn,
                          String[] pedFile,
                          String pedFileDelimiter,
                          String outputDir,
                          String[] casesToInclude)
                   throws IOException

Throws:

IOException

importPEDFile

public void importPEDFile(String dataLocation,
                          String mapdelimiter,
                          int chrcol,
                          int chrpos,
                          int snpcol,
                          String peddelimiter,
                          String outputLocation,
                          String[] casesToInclude)
                   throws IOException

Throws:

IOException

importPEDFile

public void importPEDFile(String dataLocation,
                          String outputLocation)
                   throws IOException

Throws:

IOException