umcg.genetica.io.trityper.converters

Class TriTyperToPedAndMapConverter

java.lang.Object

umcg.genetica.io.trityper.converters.TriTyperToPedAndMapConverter

public class TriTyperToPedAndMapConverter
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
TriTyperToPedAndMapConverter()

Method Summary

Modifier and Type	Method and Description
void	exportAllSNPs(String datadir, String outputDir, boolean splitByChromosome)
void	exportFamFile(TriTyperGenotypeData ds, String outdir)
void	exportSubsetOfSNPs(String datadir, String outputDir, String snpSubsetFile, String indsToExport)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TriTyperToPedAndMapConverter

public TriTyperToPedAndMapConverter()

Method Detail

exportSubsetOfSNPs

public void exportSubsetOfSNPs(String datadir,
                               String outputDir,
                               String snpSubsetFile,
                               String indsToExport)
                        throws IOException,
                               Exception

Throws:

IOException

Exception

exportAllSNPs

public void exportAllSNPs(String datadir,
                          String outputDir,
                          boolean splitByChromosome)
                   throws IOException

Throws:

IOException

exportFamFile

public void exportFamFile(TriTyperGenotypeData ds,
                          String outdir)
                   throws IOException

Throws:

IOException