umcg.genetica.io.trityper.probeannotation

Class ProbeTranslation

java.lang.Object

umcg.genetica.io.trityper.probeannotation.ProbeTranslation

public class ProbeTranslation
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
ProbeTranslation()

Method Summary

Modifier and Type	Method and Description
String	getActualMappingPosition(Integer probeId)
int	getNumProbes()
byte	getProbeChr(int p)
int	getProbeChrPos(int p)
Integer	getProbeId(String string)
String[]	getProbes()
String	getProbeSymbol(int p)
HashMap<String,String>	getProbeTranslation(String probeTranslationFile, String source, String dest)
HashMap<String,Integer>	getProbeTranslationTable()
void	load(String probeAnnotation)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProbeTranslation

public ProbeTranslation()

Method Detail

load

public void load(String probeAnnotation)
          throws IOException

Throws:

IOException

getProbeTranslation

public HashMap<String,String> getProbeTranslation(String probeTranslationFile,
                                                  String source,
                                                  String dest)
                                           throws IOException

Throws:

IOException

getProbeChr

public byte getProbeChr(int p)

getActualMappingPosition

public String getActualMappingPosition(Integer probeId)

getProbeChrPos

public int getProbeChrPos(int p)

getProbeSymbol

public String getProbeSymbol(int p)

getNumProbes

public int getNumProbes()

getProbeId

public Integer getProbeId(String string)

getProbeTranslationTable

public HashMap<String,Integer> getProbeTranslationTable()

getProbes

public String[] getProbes()