umcg.genetica.io.ucsc

Class PeakFile

java.lang.Object

umcg.genetica.io.text.TextFile

umcg.genetica.io.ucsc.PeakFile

All Implemented Interfaces:

Iterable<String>

public class PeakFile
extends TextFile

Author:

harmjan

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	PeakFile.PEAKFORMAT

Field Summary

Fields inherited from class umcg.genetica.io.text.TextFile

colon, comma, DEFAULT_BUFFER_SIZE, ENCODING, file, in, out, R, semicolon, space, tab, W, writeable

Constructor Summary

Constructors

Constructor and Description
PeakFile(String name, boolean mode)
PeakFile(String name, boolean mode, PeakFile.PEAKFORMAT format)

Method Summary

Modifier and Type	Method and Description
UCSCDataObject	parseLn()
long	size()

Methods inherited from class umcg.genetica.io.text.TextFile

append, append, close, countCols, countLines, flush, getFileName, iterator, open, readAsArray, readAsArray, readAsArrayList, readAsArrayList, readAsHashMap, readAsHashMap, readAsHashMap, readAsPairs, readAsSet, readAsTriple, readLine, readLineElems, readLineElemsIterable, readLineElemsReturnObjects, readLineElemsReturnReference, write, writeList, writeln, writeln, writeln, writelnDelimited, writelnsynced, writelnTabDelimited

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

PeakFile

public PeakFile(String name,
                boolean mode)
         throws IOException

Throws:

IOException

PeakFile

public PeakFile(String name,
                boolean mode,
                PeakFile.PEAKFORMAT format)
         throws IOException

Throws:

IOException

Method Detail

parseLn

public UCSCDataObject parseLn()
                       throws IOException

Throws:

IOException

size

public long size()