umcg.genetica.io.ucsc

Class WigFile

java.lang.Object

umcg.genetica.io.text.TextFile

umcg.genetica.io.ucsc.WigFile

All Implemented Interfaces:

Iterable<String>

public class WigFile
extends TextFile

Author:

harmjan

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	WigFile.STEPMODE

Field Summary

Fields inherited from class umcg.genetica.io.text.TextFile

colon, comma, DEFAULT_BUFFER_SIZE, ENCODING, file, in, out, R, semicolon, space, tab, W, writeable

Constructor Summary

Constructors

Constructor and Description
WigFile(String name, boolean mode)

Method Summary

Modifier and Type	Method and Description
UCSCDataObject	parseLn()
long	size()

Methods inherited from class umcg.genetica.io.text.TextFile

append, append, close, countCols, countLines, flush, getFileName, iterator, open, readAsArray, readAsArray, readAsArrayList, readAsArrayList, readAsHashMap, readAsHashMap, readAsHashMap, readAsPairs, readAsSet, readAsTriple, readLine, readLineElems, readLineElemsIterable, readLineElemsReturnObjects, readLineElemsReturnReference, write, writeList, writeln, writeln, writeln, writelnDelimited, writelnsynced, writelnTabDelimited

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

WigFile

public WigFile(String name,
               boolean mode)
        throws IOException

Throws:

IOException

Method Detail

size

public long size()

parseLn

public UCSCDataObject parseLn()
                       throws IOException

Throws:

IOException