umcg.genetica.io.bed

Class BedEntry

java.lang.Object

umcg.genetica.io.bed.BedEntry

All Implemented Interfaces:

Range, GenomicRange

public class BedEntry
extends Object
implements GenomicRange

Author:

Patrick Deelen

Constructor Summary

Constructors

Constructor and Description
BedEntry(String chr, int startPosition, int stopPositions)
BedEntry(String chr, int startPosition, int stopPositions, String name, double score)

Method Summary

Modifier and Type	Method and Description
int	getEnd() Inclusive
int	getEndExclusive()
String	getName()
double	getScore()
String	getSeqname()
int	getStart() Inclusive

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BedEntry

public BedEntry(String chr,
                int startPosition,
                int stopPositions)

BedEntry

public BedEntry(String chr,
                int startPosition,
                int stopPositions,
                String name,
                double score)

Method Detail

getStart

public int getStart()

Description copied from interface: Range

Inclusive

Specified by:

getStart in interface Range

Returns:

getEnd

public int getEnd()

Description copied from interface: Range

Inclusive

Specified by:

getEnd in interface Range

Returns:

getEndExclusive

public int getEndExclusive()

Returns:

original bed file end of range.

getSeqname

public String getSeqname()

Specified by:

getSeqname in interface GenomicRange

getName

public String getName()

getScore

public double getScore()