umcg.genetica.io.gwascatalog

Class GWASTrait

java.lang.Object

umcg.genetica.io.gwascatalog.GWASTrait

public class GWASTrait
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
GWASTrait()

Method Summary

Modifier and Type	Method and Description
void	addTopSNP(GWASSNP gwasTopSNPObj)
void	appendMappedGenes(HashSet<String> mappedGenes)
void	appendReportedGenes(HashSet<String> reportedGenes)
String	getCleanName()
HashSet<String>	getMappedGenes()
String	getName()
HashSet<String>	getReportedGenes()
GWASSNP[]	getSNPs()
GWASSNP[]	getSNPs(double pThreshold)
GWASSNP[]	getTopAssociations()
boolean	isTopAssociation(GWASSNP snp)
void	setMappedGenes(HashSet<String> mappedGenes)
void	setReportedGenes(HashSet<String> reportedGenes)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GWASTrait

public GWASTrait()

Method Detail

getName

public String getName()

getCleanName

public String getCleanName()

getSNPs

public GWASSNP[] getSNPs()

getSNPs

public GWASSNP[] getSNPs(double pThreshold)

getReportedGenes

public HashSet<String> getReportedGenes()

setReportedGenes

public void setReportedGenes(HashSet<String> reportedGenes)

appendReportedGenes

public void appendReportedGenes(HashSet<String> reportedGenes)

getMappedGenes

public HashSet<String> getMappedGenes()

setMappedGenes

public void setMappedGenes(HashSet<String> mappedGenes)

appendMappedGenes

public void appendMappedGenes(HashSet<String> mappedGenes)

toString

public String toString()

Overrides:

toString in class Object

addTopSNP

public void addTopSNP(GWASSNP gwasTopSNPObj)

getTopAssociations

public GWASSNP[] getTopAssociations()

isTopAssociation

public boolean isTopAssociation(GWASSNP snp)