umcg.genetica.io.trityper

Class MinimalEQTL

java.lang.Object

umcg.genetica.io.trityper.MinimalEQTL

public class MinimalEQTL
extends Object

Author:

harmjan

Constructor Summary

Constructors

Constructor and Description
MinimalEQTL()
MinimalEQTL(double pValue, String rsName, byte rsChr, int rsChrPos, String probe, byte probeChr, int probeChrPos)
MinimalEQTL(EQTL e)
MinimalEQTL(String[] eQTLrowInformation)

Method Summary

Modifier and Type	Method and Description
static ArrayList<MinimalEQTL>	convertArray(ArrayList<EQTL> qtlBuffer)
char	getAssesedAllele()
String	getProbe()
Byte	getProbeChr()
Integer	getProbeChrPos()
double	getPvalue()
Double	getPvalueAbs()
Byte	getRsChr()
Integer	getRsChrPos()
String	getRsName()
double	getzScore()
void	setAssesedAllele(char assesedAllele)
void	setProbe(String probe)
void	setProbeChr(byte probeChr)
void	setProbeChrPos(int probeChrPos)
void	setPvalue(double pvalue)
void	setRsChr(byte rsChr)
void	setRsChrPos(int rsChrPos)
void	setRsName(String rsName)
void	setzScore(double zScore)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MinimalEQTL

public MinimalEQTL()

MinimalEQTL

public MinimalEQTL(String[] eQTLrowInformation)

MinimalEQTL

public MinimalEQTL(double pValue,
                   String rsName,
                   byte rsChr,
                   int rsChrPos,
                   String probe,
                   byte probeChr,
                   int probeChrPos)

MinimalEQTL

public MinimalEQTL(EQTL e)

Method Detail

getPvalue

public double getPvalue()

Returns:

the pvalue

setPvalue

public void setPvalue(double pvalue)

Parameters:

pvalue - the pvalue to set

getRsName

public String getRsName()

Returns:

the rsName

setRsName

public void setRsName(String rsName)

Parameters:

rsName - the rsName to set

getRsChr

public Byte getRsChr()

Returns:

the rsChr

setRsChr

public void setRsChr(byte rsChr)

Parameters:

rsChr - the rsChr to set

getRsChrPos

public Integer getRsChrPos()

Returns:

the rsChrPos

setRsChrPos

public void setRsChrPos(int rsChrPos)

Parameters:

rsChrPos - the rsChrPos to set

getProbe

public String getProbe()

Returns:

the probe

setProbe

public void setProbe(String probe)

Parameters:

probe - the probe to set

getProbeChr

public Byte getProbeChr()

Returns:

the probeChr

setProbeChr

public void setProbeChr(byte probeChr)

Parameters:

probeChr - the probeChr to set

getProbeChrPos

public Integer getProbeChrPos()

Returns:

the probeChrPos

setProbeChrPos

public void setProbeChrPos(int probeChrPos)

Parameters:

probeChrPos - the probeChrPos to set

getPvalueAbs

public Double getPvalueAbs()

getzScore

public double getzScore()

setzScore

public void setzScore(double zScore)

getAssesedAllele

public char getAssesedAllele()

setAssesedAllele

public void setAssesedAllele(char assesedAllele)

convertArray

public static ArrayList<MinimalEQTL> convertArray(ArrayList<EQTL> qtlBuffer)

toString

public String toString()

Overrides:

toString in class Object