Package org.anchoranalysis.feature.io.csv.table

Class FeatureTableCSVGenerator<T>

Object

org.anchoranalysis.io.generator.SingleFileTypeGenerator<T,T>

org.anchoranalysis.io.generator.OneStageGenerator<T>

org.anchoranalysis.io.generator.tabular.CSVGenerator<T>

org.anchoranalysis.feature.io.csv.table.FeatureTableCSVGenerator<T>

Type Parameters:

T - type of object that describes all rows of feature calculations.

All Implemented Interfaces:

Generator<T>, TransformingGenerator<T,T>, org.anchoranalysis.io.output.writer.ElementWriter<T>

public abstract class FeatureTableCSVGenerator<T>
extends CSVGenerator<T>

Base class for a Generator that outputs a feature-table in CSV format.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
FeatureTableCSVGenerator(List<String> headerNames)

Method Summary

Modifier and Type	Method	Description
protected abstract void	writeFeaturesToCSV(CSVWriter writer, T allFeatureResults, List<String> headerNames)	Writes the features to the CSV-file.
void	writeToFile(T element, org.anchoranalysis.io.output.bean.OutputWriteSettings settings, Path filePath)

Methods inherited from class org.anchoranalysis.io.generator.tabular.CSVGenerator

selectFileExtension

Methods inherited from class org.anchoranalysis.io.generator.OneStageGenerator

transform

Methods inherited from class org.anchoranalysis.io.generator.SingleFileTypeGenerator

write, writeWithIndex

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FeatureTableCSVGenerator

public FeatureTableCSVGenerator(List<String> headerNames)

Method Details

writeToFile

public void writeToFile(T element, org.anchoranalysis.io.output.bean.OutputWriteSettings settings, Path filePath) throws org.anchoranalysis.io.output.error.OutputWriteFailedException

Specified by:

writeToFile in class SingleFileTypeGenerator<T,T>

Throws:

org.anchoranalysis.io.output.error.OutputWriteFailedException

writeFeaturesToCSV

protected abstract void writeFeaturesToCSV(CSVWriter writer, T allFeatureResults, List<String> headerNames) throws org.anchoranalysis.io.output.error.OutputWriteFailedException

Writes the features to the CSV-file.

Parameters:

writer - the write to use

allFeatureResults - all rows to write

headerNames - header-names for columns, corresponding to the data in rows.

Throws:

org.anchoranalysis.io.output.error.OutputWriteFailedException - if the output cannot be written.