All Classes

Class	Description
Align	Align the bounding-box to the larger without resizing.
AlignmentOnDimension	How the alignment will occur for a particular dimension.
AreaPhysical	Area expressed in square meters, or units thereof.
AreaPixels	Area expressed in pixels.
Arrange	Creates a stack that combines other stacks.
ArrangeStackException	When the position of a particular RGBStack cannot be determined, when combined with others onto a single plane.
AxisAlignedUnitVector	Creates a DirectionVector that is a unit-vector along a particular image-axis.
BeanProviderAsStackBase<T,S>	A provider base-class that as well as providing type S, also provides a Stack.
BinaryNotOffVoxels	Selects voxels that are not off voxels.
BinaryNotOnVoxels	Selects voxels that are not on voxels.
BinaryOffVoxels	Selects only the off voxels.
BinaryOnVoxels	Selects only the on pixels.
BinarySegmentation	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
BinarySegmentationParameters	Parameters that are passed during a BinarySegmentation.
BinarySegmentationReference	Uses an existing BinarySegmentation that is located by a unique identifier.
BinarySegmentationThreshold	Implementation of BinarySegmentation that performs global thresholding.
BinarySegmentationUnary	An implementation of BinarySegmentation that delegates to one other BinarySegmentation.
BinaryVoxelsBase	A base class for implementations of RelationToThreshold where the threshold is derived from a BinaryValuesInt.
BoundingBoxEnclosed	Describes a BoundingBox that is optionally enclosed by a larger containing BoundingBox to given padding.
BoxAligner	Aligns a smaller BoundingBox to fit inside a larger BoundingBox.
CalculateLevel	Calculates a threshold-level from a histogram.
CalculateLevelUnary	Implementation of CalculateLevel that calls a single delegate CalculateLevel.
Cell	Indicates how to arrange one or more RGBStacks in a cell in a table.
ChannelAggregator	A method of aggregating the voxels from many identically-sized Channels into one.
ChannelProvider	Base class for beans that implement Provider to provide a Channel and associated Stack.
ChannelProviderBinary	Implementation of ChannelProvider that calls two ChannelProviders that must provide Channels of the same dimensions.
ChannelProviderTernary	Implementation of ChannelProvider that calls three ChannelProviders that must provide Channels of the same dimensions.
ChannelProviderUnary	Implementation of ChannelProvider that calls a single delegate ChannelProvider.
ColorProvider	Base class for beans that implement Provider to provide a ColorList.
ConsistentChannelChecker	Checks that all Channels have the same voxel-data-type.
ConvertChannelTo<T>	Creates a ChannelConverter for converting a channel to a particular type.
ConvertChannelToWithHistogram<T>	Creates a ChannelConverterAttached<Histogram, T> for converting a channel to a particular type, making use of a Histogram.
DimensionsProvider	Base class for beans that implement Provider to provide Dimensions.
DirectionVectorBean	A bean that creates a DirectionVector.
DistancePhysical	Implementation of UnitValueDistance that specifies a value in physical units, as described by particular recognized strings.
DistanceVoxels	Implementation of UnitValueDistance that specifies a value in voxels, ignoring any physical image resolution.
ExtentToArrange	A particular Extent to be arranged, with calculated aspect-ratio, and its unique index position.
Fill	Montages Extents together to completely fill the available space, while preserving aspect ratio.
FitCombinedScaler	Scales the size of images to match the target image, preserving aspect-ratio.
Grow	Grow the bounding-box to fill larger as much as possible.
HistogramProvider	Base class for beans that implement Provider to provide a Histogram.
HistogramProviderUnary	Implementation of HistogramProvider that calls a single delegate HistogramProvider.
ImageBean<T>	A bean that must be initialized with ImageInitialization before usage.
ImageInitialization	The state used to initialize a ImageBean.
ImgLib2Lanczos	Resizes with an interpolator that uses Lanczos resampling as implemented in Imglib2.
ImgLib2Linear	Resizes with an interpolator that uses linear interpolation as implemented in Imglib2.
IntensityQuantiles	Implementation of StackDisplayer that converts to unsigned-8bit by taking the upper and lower quantiles of the intensity range.
Interpolator	Defines a particular type of interpolation method that can be used for resizing images.
MaskProvider	Base class for beans that implement Provider to provide a Mask and associated Stack.
MaskProviderUnary	Implementation of MaskProvider that calls a single delegate MaskProvider.
None	An implementation of Interpolator that performs no interpolation.
ObjectCollectionProvider	Base class for beans that implement Provider to provide an ObjectCollection.
ObjectCollectionProviderUnary	Implementation of ObjectCollectionProvider that calls a single delegate Provider<ObjectCollection>.
ObjectFilter	Base class for filtering an ObjectCollection to remove objects according to a criteria.
ObjectMatcher	Matches an object with other objects.
Overlay	Overlays one image on the other.
Padding	Padding (whitespace of certain extent) placed around an object in XY direction and in Z direction.
PopulateStoreFromDefine<V extends BeanInitialization>	Helps populates a NamedProviderStore from the contents of a Define.
PositionChoices	The choices of text that may describe the position of an entity along a particular axis.
PositionChoicesConstants	A constant set of text strings used to indicate particular choices.
ScaleCalculator	Calculating a scaling-factor from dimensions.
SegmentationBean<T>	Performs some kind of segmentation on an image.
SegmentationFailedException	When a segmentation cannot successfully complete.
SegmentChannelIntoObjects	A base class for algorithms to segment a channel into one or more objects.
SegmentChannelIntoObjectsUnary	Implementation of SegmentChannelIntoObjects that calls a single delegate SegmentChannelIntoObjects.
Single	A single Stack arranged as-is.
SizeXY	The size of an entity in the X and Y dimensions.
SpecifyVector	Specifies each axis-component of a vector in a particular direction.
StackArrangement	A list of BoundingBoxes that indicate where to locate corresponding Stacks on a unified larger image.
StackArranger	Base class for a method that determines positions for RGBStacks when combined onto a single plane.
StackCopierAtBox	Copies a source stack into a destination stack at a particular BoundingBox.
StackDisplayer	Converts from a Channel or Stack to a DisplayStack so that it can be displayed.
StackProvider	Base class for beans that implement Provider to provide a Stack.
StackProviderUnary	Implementation of StackProvider that calls a single delegate Provider<Stack>.
Thresholder	Thresholds voxels to create a binary-voxels using global thresholding.
ThresholderGlobal	Performs global thresholding.
Tile	A higher-level aggregate structure that arranges other StackArrangers in a tabular pattern.
UnitValueArea	A base class for a value that describes an area measurement on the image.
UnitValueDistance	Base class for methods to specify a distance along a vector in an image.
UnitValueException	When a failure occurs converting from one type of units to another.
UnitValueExtent	A base class for a value that describes an area or volume measurement, which can then be resolved to a number of voxels.
UnitValueVolume	A base class for a value that describes a volume measurement on the image.
VolumePhysical	Volume expressed in cubic meters, or units thereof.
VolumeVoxels	Volume expressed in voxels.