Package org.anchoranalysis.image.bean.segment.binary

Class BinarySegmentationUnary

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,ImageInitialization>

org.anchoranalysis.image.bean.ImageBean<T>

org.anchoranalysis.image.bean.segment.SegmentationBean<BinarySegmentation>

org.anchoranalysis.image.bean.segment.binary.BinarySegmentation

org.anchoranalysis.image.bean.segment.binary.BinarySegmentationUnary

public abstract class BinarySegmentationUnary
extends BinarySegmentation

An implementation of BinarySegmentation that delegates to one other BinarySegmentation.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
BinarySegmentationUnary()

Method Summary

Modifier and Type	Method	Description
BinarySegmentation	getSegment()	The delegate BinarySegmentation that may be called.
org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer>	segment(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
protected abstract org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer>	segmentFromExistingSegmentation(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask, BinarySegmentation segment)	Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.
void	setSegment(BinarySegmentation segment)	The delegate BinarySegmentation that may be called.

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BinarySegmentationUnary

public BinarySegmentationUnary()

Method Details

segment

public org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer> segment(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask) throws SegmentationFailedException

Description copied from class: BinarySegmentation

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Specified by:

segment in class BinarySegmentation

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

segmentFromExistingSegmentation

protected abstract org.anchoranalysis.image.voxel.binary.BinaryVoxels<org.anchoranalysis.image.voxel.buffer.primitive.UnsignedByteBuffer> segmentFromExistingSegmentation(org.anchoranalysis.image.voxel.VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<org.anchoranalysis.image.voxel.object.ObjectMask> objectMask, BinarySegmentation segment) throws SegmentationFailedException

Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

segment - the delegate BinarySegmentation.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

getSegment

public BinarySegmentation getSegment()

The delegate BinarySegmentation that may be called.

setSegment

public void setSegment(BinarySegmentation segment)

The delegate BinarySegmentation that may be called.