Package org.anchoranalysis.image.inference.segment

Class SegmentedObjectsAtScale

Object

org.anchoranalysis.image.inference.segment.SegmentedObjectsAtScale

public class SegmentedObjectsAtScale
extends Object

Exposes a particular set of segmented-objects at a particular scale.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
SegmentedObjectsAtScale(List<LabelledWithConfidence<MultiScaleObject>> source, Function<MultiScaleObject,org.anchoranalysis.image.voxel.object.ObjectMask> extractObject, Stack background, org.anchoranalysis.image.bean.displayer.StackDisplayer displayer, ExecutionTimeRecorder executionTimeRecorder, String executionTimeSuffix)

Method Summary

Modifier and Type	Method	Description
Stack	background()	The background image associated with this particular scale.
DisplayStack	backgroundDisplayStack()	Like background() but instead creates a DisplayStack.
org.anchoranalysis.spatial.box.Extent	extent()	The width and height and depth of the background image, associated with the objects.
List<LabelledWithConfidence<org.anchoranalysis.image.voxel.object.ObjectMask>>	listWithLabels()	Create a List of all contained objects, including confidence.
List<WithConfidence<org.anchoranalysis.image.voxel.object.ObjectMask>>	listWithoutLabels()	Create a List of all contained objects, including confidence.
org.anchoranalysis.image.voxel.object.ObjectCollection	objects()	Create a ObjectCollection of all contained objects, excluding confidence.
ObjectCollectionWithProperties	objectsWithProperties()	Like objects() but instead creates a ObjectCollectionWithProperties containing empty properties.
int	size()	A count of the total number of elements in each representation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SegmentedObjectsAtScale

public SegmentedObjectsAtScale(List<LabelledWithConfidence<MultiScaleObject>> source, Function<MultiScaleObject,org.anchoranalysis.image.voxel.object.ObjectMask> extractObject, Stack background, org.anchoranalysis.image.bean.displayer.StackDisplayer displayer, ExecutionTimeRecorder executionTimeRecorder, String executionTimeSuffix)

Method Details

listWithLabels

public List<LabelledWithConfidence<org.anchoranalysis.image.voxel.object.ObjectMask>> listWithLabels()

Create a List of all contained objects, including confidence.

Returns:

a newly created List that reuses the existing ObjectMask stored in the structure.

listWithoutLabels

public List<WithConfidence<org.anchoranalysis.image.voxel.object.ObjectMask>> listWithoutLabels()

Create a List of all contained objects, including confidence.

Returns:

a newly created List that reuses the existing ObjectMask stored in the structure.

objects

public org.anchoranalysis.image.voxel.object.ObjectCollection objects()

Create a ObjectCollection of all contained objects, excluding confidence.

Returns:

ObjectCollection derived from source and cached.

objectsWithProperties

public ObjectCollectionWithProperties objectsWithProperties()

Like objects() but instead creates a ObjectCollectionWithProperties containing empty properties.

Returns:

an ObjectCollection derived from objects() and cached.

backgroundDisplayStack

public DisplayStack backgroundDisplayStack()

Like background() but instead creates a DisplayStack.

Returns:

a DisplayStack derived from background() and cached.

extent

public org.anchoranalysis.spatial.box.Extent extent()

The width and height and depth of the background image, associated with the objects.

i.e. the size of each of the three possible dimensions.

All objects should reside exclusively within this space.

Returns:

the extent.

size

public int size()

A count of the total number of elements in each representation.

Returns:

the total number of elements, valid for all representations.

background

public Stack background()

The background image associated with this particular scale.