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Package Summary
Package
Description
Data-structures to store and manipulate image raster-data or voxels.
Arithmetic operations for
Voxels.Assigns values to some or all voxels.
The
BinaryVoxels class and related operations.Defining on and off intensity-values to interpret an image in a binary way.
A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels.Conversion of both primitive data types and image structures between Anchor's data-structures and
other representations.
A container with voxel-buffers for each z-slice.
Converting
Voxels to different data-types.Converts anchor data-structures to the
BufferedImage used by Java's AWT.Converts anchor data-structures to those used by ImgLib2.
The different data-types that can be used to represent voxels.
Methods to read/copy/duplicate portions of voxels.
Methods to find or count voxels that satisfy a predicate.
Creates new instances of
Voxels and VoxelsUntyped with specific data-types.Utilities to iterate over voxel-locations in images and sub-regions of images.
Like
org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities.Iterating over a point's neighboring voxels.
Routines for moving a
KernelPointCursor around the
neighboring voxels of the point.Functional-interfaces for processing different combinations of points and buffers that return a
boolean.
Functional-interfaces for processing different combinations of points and buffers that do not
return a value.
Functional-interfaces for processing different combinations of points and raw buffers, but not
VoxelBuffer.Functional-interfaces for processing different combinations of points and
VoxelBuffer but not raw buffers.Applying a kernel via
convolution to voxels.
Kernels to count the number of voxels that are equal to a particular value.
Kernels that apply morphological operations.
Kernel to find outline voxels on an object.
A region in proximity to a voxel, encompassing this voxel as well as others.
The fundamental data class that is an
ObjectMask
and related structures.Morphological operations
applied to
ObjectMasks.Predicates to match certain voxels as used in
org.anchoranalysis.image.voxel.object.morphological.Classes for calculating differnet kind of projections of voxel values across multiple buffers.
Classes for performing both a Maximum Intensity
Projection and a minimum projection.
Different interpolator methods to use when scaling voxels.
Statistics about aggregated voxel intensities.
Thresholding operations on voxels.