Uses of Class
org.anchoranalysis.image.voxel.object.ObjectMask

Packages that use ObjectMask

Package	Description
org.anchoranalysis.image.voxel	Data-structures to store and manipulate image raster-data or voxels.
org.anchoranalysis.image.voxel.arithmetic	Arithmetic operations for Voxels.
org.anchoranalysis.image.voxel.assigner	Assigns values to some or all voxels.
org.anchoranalysis.image.voxel.extracter	Methods to read/copy/duplicate portions of voxels.
org.anchoranalysis.image.voxel.extracter.predicate	Methods to find or count voxels that satisfy a predicate.
org.anchoranalysis.image.voxel.iterator	Utilities to iterate over voxel-locations in images and sub-regions of images.
org.anchoranalysis.image.voxel.iterator.intersecting	Like org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over the intersecting regions of two entities.
org.anchoranalysis.image.voxel.iterator.neighbor	Iterating over a point's neighboring voxels.
org.anchoranalysis.image.voxel.kernel.count	Kernels to count the number of voxels that are equal to a particular value.
org.anchoranalysis.image.voxel.neighborhood	A region in proximity to a voxel, encompassing this voxel as well as others.
org.anchoranalysis.image.voxel.object	The fundamental data class that is an ObjectMask and related structures.
org.anchoranalysis.image.voxel.object.morphological	Morphological operations applied to ObjectMasks.
org.anchoranalysis.image.voxel.thresholder	Thresholding operations on voxels.

Uses of ObjectMask in org.anchoranalysis.image.voxel

Methods in org.anchoranalysis.image.voxel with parameters of type ObjectMask

Modifier and Type	Method	Description
void	VoxelsUntyped.copyVoxelsTo(ObjectMask objectSource, VoxelsUntyped destination, BoundingBox boxDestination)	Copies the voxels into a destination, but only those voxels inside an ObjectMask.

Uses of ObjectMask in org.anchoranalysis.image.voxel.arithmetic

Methods in org.anchoranalysis.image.voxel.arithmetic with parameters of type ObjectMask

Modifier and Type	Method	Description
void	VoxelsArithmetic.addTo(ObjectMask object, int valueToBeAdded)	Adds a constant-value to each voxel but only for voxels inside an object-mask.
void	VoxelsArithmetic.multiplyBy(ObjectMask object, double factor)	Multiplies each voxel by constant factor but only for voxels inside an ObjectMask.

Uses of ObjectMask in org.anchoranalysis.image.voxel.assigner

Methods in org.anchoranalysis.image.voxel.assigner with parameters of type ObjectMask

Modifier and Type	Method	Description
void	VoxelsAssigner.toEitherTwoObjects(ObjectMask object1, ObjectMask object2, BoundingBox restrictTo)	Sets voxels to a value if the position is on in either of two masks
void	VoxelsAssigner.toObject(ObjectMask object)	Sets voxels in a box to a particular value if they match an object-mask
void	VoxelsAssigner.toObject(ObjectMask object, BoundingBox restrictTo)	Sets voxels in a box to a particular value if they match a object-mask (but only a part of the object-mask)
void	VoxelsAssigner.toObjectIf(ObjectMask object, IntPredicate voxelPredicate)	Sets voxels in a box to a particular value if they match an object-mask and a voxel matches a predicate
boolean	VoxelsAssigner.toObjectWhile(ObjectMask object, IntPredicate voxelPredicate)	Sets voxels in a box to a particular value if they match an object-mask and each voxel matches a predicate

Uses of ObjectMask in org.anchoranalysis.image.voxel.extracter

Methods in org.anchoranalysis.image.voxel.extracter with parameters of type ObjectMask

Modifier and Type	Method	Description
void	VoxelsExtracter.objectCopyTo(ObjectMask from, Voxels<T> voxelsDestination, BoundingBox destinationBox)	Copies an area corresponding to an object-mask to another Voxels.

Uses of ObjectMask in org.anchoranalysis.image.voxel.extracter.predicate

Methods in org.anchoranalysis.image.voxel.extracter.predicate that return ObjectMask

Modifier and Type	Method	Description
ObjectMask	PredicateAtCorner.deriveObject(BoundingBox box)
ObjectMask	PredicateImplementation.deriveObject(BoundingBox box)
ObjectMask	VoxelsPredicate.deriveObject(BoundingBox box)	Creates an ObjectMask for all the voxels inside the bounding-box satisfying the predicate.

Methods in org.anchoranalysis.image.voxel.extracter.predicate that return types with arguments of type ObjectMask

Modifier and Type	Method	Description
Optional<ObjectMask>	PredicateAtCorner.deriveObjectTight()
Optional<ObjectMask>	PredicateImplementation.deriveObjectTight()
Optional<ObjectMask>	VoxelsPredicate.deriveObjectTight()	Creates an ObjectMask for all the voxels satisfying the predicate, minimally fitting the bounding-box to the on voxels only.

Methods in org.anchoranalysis.image.voxel.extracter.predicate with parameters of type ObjectMask

Modifier and Type	Method	Description
int	PredicateAtCorner.countForObject(ObjectMask object)
int	PredicateImplementation.countForObject(ObjectMask object)
int	VoxelsPredicate.countForObject(ObjectMask object)	Counts the number of values satisfying the predicate - but restricted to voxels corresponding to on in an object-mask.

Uses of ObjectMask in org.anchoranalysis.image.voxel.iterator

Methods in org.anchoranalysis.image.voxel.iterator with parameters of type ObjectMask

Modifier and Type	Method	Description
static <T> boolean	IterateVoxelsObjectMask.allMatchIntensity(ObjectMask object, Voxels<T> voxels, IntPredicate predicate)	Do all points on an object-mask match a predicate on the point's voxel-intensity?
static <T> void	IterateVoxelsObjectMask.withBuffer(ObjectMask object, Voxels<T> voxels, ProcessBufferUnary<T> process)	Iterate over each voxel in an object-mask - with one associated buffer for each slice from Voxels.
static void	IterateVoxelsObjectMask.withPoint(ObjectMask firstMask, Optional<ObjectMask> secondMask, ProcessPoint process)	Iterate over each point that is located on an object-mask AND optionally a second-mask
static void	IterateVoxelsObjectMask.withPoint(ObjectMask object, ProcessPoint process)	Iterate over each voxel that is located on an object-mask
static <S,T> void	IterateVoxelsObjectMask.withTwoBuffers(ObjectMask object, Voxels<S> voxels1, Voxels<T> voxels2, ProcessBufferBinary<S,T> process)	Iterate over each voxel with a corresponding on value in an object-mask - and with two associated buffers for each slice covering the all the global space i.e.
static <S,T> void	IterateVoxelsObjectMask.withTwoMixedBuffers(ObjectMask object, Voxels<S> voxels1, Voxels<T> voxels2, ProcessVoxelBufferBinaryMixed<S,T> process)	Iterate over each voxel in an object-mask - with one associated voxel-buffer and one associated buffer for each slice.
static <S,T> void	IterateVoxelsObjectMask.withTwoVoxelBuffers(ObjectMask object, Voxels<S> voxels1, Voxels<T> voxels2, ProcessVoxelBufferBinary<S,T> process)	Iterate over each voxel in an object-mask - with two associated voxel-buffers and for each slice.
static <T> void	IterateVoxelsObjectMask.withVoxelBuffer(ObjectMask object, Voxels<T> voxels, Optional<BoundingBox> restrictTo, ProcessVoxelBufferUnary<T> process)	Iterate over each voxel on an object-mask with one associated VoxelBuffer.
static <T> void	IterateVoxelsObjectMask.withVoxelBuffer(ObjectMask object, Voxels<T> voxels, ProcessVoxelBufferUnary<T> process)	Iterate over each voxel on an object-mask with one associated VoxelBuffer.

Method parameters in org.anchoranalysis.image.voxel.iterator with type arguments of type ObjectMask

Modifier and Type	Method	Description
static <T> void	IterateVoxelsObjectMaskOptional.withBuffer(Optional<ObjectMask> objectMask, Voxels<T> voxels, ProcessBufferUnary<T> process)	Iterate over each voxel (or optionally only on object-mask) with one associated buffer.
static void	IterateVoxelsObjectMask.withPoint(ObjectMask firstMask, Optional<ObjectMask> secondMask, ProcessPoint process)	Iterate over each point that is located on an object-mask AND optionally a second-mask
static void	IterateVoxelsObjectMaskOptional.withPoint(Optional<ObjectMask> objectMask, Extent extent, ProcessPoint process)	Iterate over all points that are located on a object-mask or else all points in an extent.
static void	IterateVoxelsObjectMaskOptional.withSlidingBuffer(Optional<ObjectMask> objectMask, SlidingBuffer<?> buffer, ProcessPoint process)	Iterate over each voxel in a sliding-buffer, optionally restricting it to be only voxels in a certain object
static <S,T> void	IterateVoxelsObjectMaskOptional.withTwoBuffers(Optional<ObjectMask> objectMask, Voxels<S> voxels1, Voxels<T> voxels2, ProcessBufferBinary<S,T> process)	Iterate over each voxel (or optionally only on object-mask) with two associated buffers.

Uses of ObjectMask in org.anchoranalysis.image.voxel.iterator.intersecting

Methods in org.anchoranalysis.image.voxel.iterator.intersecting with parameters of type ObjectMask

Modifier and Type	Method	Description
static int	CountVoxelsIntersectingObjects.countIntersectingVoxels(ObjectMask object1, ObjectMask object2)	Counts the number of intersecting-voxels between two object-masks.
static boolean	CountVoxelsIntersectingObjects.hasIntersectingVoxels(ObjectMask object1, ObjectMask object2)	Determines whether there are any intersecting voxels on two object-masks.

Uses of ObjectMask in org.anchoranalysis.image.voxel.iterator.neighbor

Methods in org.anchoranalysis.image.voxel.iterator.neighbor with parameters of type ObjectMask

Modifier and Type	Method	Description
static <T> ProcessVoxelNeighbor<T>	ProcessVoxelNeighborFactory.withinMask(ObjectMask object, ProcessChangedPointAbsoluteMasked<T> process)	Creates to process neighbors that must lie within an ObjectMask.
static <T> ProcessVoxelNeighbor<T>	ProcessVoxelNeighborFactory.withinMask(ObjectMask object, ProcessVoxelNeighborAbsolute<T> process)	Creates to process neighbors that must lie within an ObjectMask.

Method parameters in org.anchoranalysis.image.voxel.iterator.neighbor with type arguments of type ObjectMask

Modifier and Type	Method	Description
static <T> ProcessVoxelNeighbor<T>	ProcessVoxelNeighborFactory.within(Optional<ObjectMask> containingMask, Extent extentFallback, ProcessVoxelNeighborAbsolute<T> process)	Creates to process neighbors that must lie within either an object-mask or an extent (as a fallback).

Uses of ObjectMask in org.anchoranalysis.image.voxel.kernel.count

Constructors in org.anchoranalysis.image.voxel.kernel.count with parameters of type ObjectMask

Modifier	Constructor	Description
	CountKernelNeighborhoodMask(ObjectMask objectRequireHigh)	Create with object-mask.

Uses of ObjectMask in org.anchoranalysis.image.voxel.neighborhood

Methods in org.anchoranalysis.image.voxel.neighborhood that return types with arguments of type ObjectMask

Modifier and Type	Method	Description
static GraphWithPayload<ObjectMask, Integer>	NeighborGraph.create(ObjectCollection objects, Extent sceneExtent, boolean preventObjectIntersection, boolean do3D)	Create the graph with object-masks as vertices, where edges represent the number of neighboring voxels between objects.

Method parameters in org.anchoranalysis.image.voxel.neighborhood with type arguments of type ObjectMask

Modifier and Type	Method	Description
static <V> GraphWithPayload<V,Integer>	NeighborGraph.create(List<V> vertices, Function<V, ObjectMask> vertexToObject, Extent sceneExtent, boolean preventObjectIntersection, boolean do3D)	Like NeighborGraph.create(ObjectCollection, Extent, boolean, boolean) but extracts objects from a list of elements which form the vertices.

Uses of ObjectMask in org.anchoranalysis.image.voxel.object

Classes in org.anchoranalysis.image.voxel.object that implement interfaces with type arguments of type ObjectMask

Modifier and Type	Class	Description
class	ObjectCollection	A collection of ObjectMasks.

Methods in org.anchoranalysis.image.voxel.object that return ObjectMask

Modifier and Type	Method	Description
ObjectMask	ObjectMask.clampTo(Extent extent)	Makes sure an object fits inside an extent, removing any parts which do not.
ObjectMask	ObjectMask.duplicate()	Creates a deep-copy of the current object-mask.
ObjectMask	ObjectMask.extractSlice(int sliceIndex, boolean keepIndex)	Extracts one particular slice as an object-mask
ObjectMask	ObjectMask.flattenZ()	A maximum-intensity projection.
ObjectMask	ObjectCollection.get(int index)	Get an ObjectMask at a particular position in the collection.
ObjectMask	ObjectMask.growBuffer(Point3i growthNegative, Point3i growthPositive, Optional<Extent> clipRegion)	Grows the object-mask's voxel buffers in the positive and negative directions by a certain amount.
ObjectMask	ObjectMask.growToZ(int sizeZ)	Grows a single z-sliced ObjectMask by duplicating the slice across the z-dimension sizeZ number of times.
ObjectMask	ObjectMask.invert()	Produces a new object-mask that uses the same voxel-buffer but switches the off and on mapping.
ObjectMask	ObjectMask.mapBoundingBoxChangeExtent(BoundingBox boxToAssign)	Applies a function to map the bounding-box to a new-value (whose extent is expected to change in value).
ObjectMask	ObjectMask.mapBoundingBoxPreserveExtent(UnaryOperator<BoundingBox> mapOperation)	Applies a function to map the bounding-box to a new-value (whose extent should be unchanged in value).
ObjectMask	ObjectMask.region(BoundingBox box, boolean reuseIfPossible)	A (sub-)region of the object-mask.
ObjectMask	ObjectMask.regionIntersecting(BoundingBox box)	Creates an object-mask covering the a bounding-box (that is required to intersect at least partially)
ObjectMask	ObjectMask.regionZ(int zMin, int zMax)	Creates an object-mask with a subrange of the slices.
ObjectMask	ObjectMask.relativeMaskTo(BoundingBox box)	Creates a new object-mask with coordinates changed to be relative to another box.
ObjectMask	ObjectMask.replaceVoxels(Voxels<UnsignedByteBuffer> voxelsToAssign)	Replaces the voxels in the object-mask.
ObjectMask	ObjectMask.scale(ScaleFactor factor)	Produces a scaled-version of an object-mask.
ObjectMask	ObjectMask.scale(ScaleFactor factor, Optional<Extent> clipTo)	Produces a scaled-version of an object-mask.
ObjectMask	ObjectMask.shiftBackBy(ReadableTuple3i shift)	Shifts the object-mask by moving its bounding-box backwards.
ObjectMask	ObjectMask.shiftBy(ReadableTuple3i shift)	Shifts the object-mask by moving its bounding-box forwards.
ObjectMask	ObjectMask.shiftToOrigin()	Creates a new object-mask with identical voxels but with the bounding-box beginning at the origin (0,0,0).

Methods in org.anchoranalysis.image.voxel.object that return types with arguments of type ObjectMask

Modifier and Type	Method	Description
List<ObjectMask>	ObjectCollection.asList()	Exposes the underlying objects as a ArrayList.
static IntersectingObjects<ObjectMask>	IntersectingObjects.create(ObjectCollection objects)	Creates from an ObjectCollection.
Optional<ObjectMask>	DeriveObjectFromPoints.deriveObject()	Derives an ObjectMask that includes all points that were previously added.
Stream<ObjectMask>	ObjectMaskStream.filterSubsetStream(Predicate<ObjectMask> predicate, Collection<Integer> indices)	Like ObjectMaskStream.filterSubset(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>, java.util.Collection<java.lang.Integer>) but returns a stream rather than a ObjectCollection.
Optional<ObjectMask>	ObjectMask.intersect(ObjectMask other, Extent extent)	Intersects this object-mask with another
Iterator<ObjectMask>	ObjectCollection.iterator()
Stream<ObjectMask>	ObjectCollection.streamIndices(Collection<Integer> indices)	Streams only objects at specific indices.
Stream<ObjectMask>	ObjectCollection.streamStandardJava()	A stream of object-masks as per Java's standard collections interface.
Set<ObjectMask>	ObjectMaskStream.toSet()	Converts to a HashSet.

Methods in org.anchoranalysis.image.voxel.object with parameters of type ObjectMask

Modifier and Type	Method	Description
int	ObjectMask.countIntersectingVoxels(ObjectMask other)	Counts the number of intersecting-voxels between two object-masks.
boolean	ObjectMask.equalsDeep(ObjectMask other)	A deep equality check with another ObjectMask.
boolean	ObjectMask.hasIntersectingVoxels(ObjectMask other)	Determines whether there are any intersecting voxels on two object-masks.
Optional<ObjectMask>	ObjectMask.intersect(ObjectMask other, Extent extent)	Intersects this object-mask with another
Set<T>	IntersectingObjects.intersectsWith(ObjectMask object)	All elements that intersect with a particular object.
Stream<T>	IntersectingObjects.intersectsWithStream(ObjectMask object)	Like IntersectingObjects.intersectsWith(ObjectMask) but returns the objects as a Stream rather than a Set.
static ObjectCollection	ObjectCollectionFactory.of(ObjectMask... object)	Creates a new collection with elements from the parameter-list.

Method parameters in org.anchoranalysis.image.voxel.object with type arguments of type ObjectMask

Modifier and Type	Method	Description
boolean	ObjectMaskStream.anyMatch(Predicate<ObjectMask> predicate)	Does the predicate evaluate to true on any object in the collection?
ObjectCollection	ObjectMaskStream.filter(Predicate<ObjectMask> predicate)	Filters a ObjectCollection to include certain items based on a predicate
<E extends Exception> ObjectCollection	ObjectMaskStream.filter(CheckedPredicate<ObjectMask, E> predicate, Class<? extends Exception> throwableClass)	Filters a ObjectCollection to include certain items based on a predicate
ObjectCollection	ObjectMaskStream.filterAndMap(Predicate<ObjectMask> predicate, UnaryOperator<ObjectMask> mapFunction)	Performs a ObjectMaskStream.filter(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>) and then a ObjectMaskStream.map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.image.voxel.object.ObjectMask, org.anchoranalysis.image.voxel.object.ObjectMask, E>).
ObjectCollection	ObjectMaskStream.filterAndMap(Predicate<ObjectMask> predicate, UnaryOperator<ObjectMask> mapFunction)	Performs a ObjectMaskStream.filter(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>) and then a ObjectMaskStream.map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.image.voxel.object.ObjectMask, org.anchoranalysis.image.voxel.object.ObjectMask, E>).
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.filterAndMapFrom(Collection<T> collection, Predicate<T> predicate, Class<? extends E> throwableClass, CheckedFunction<T, ObjectMask, E> mapFunction)	Creates a new collection by filtering an iterable and then mapping it to ObjectMask.
static <T> ObjectCollection	ObjectCollectionFactory.filterAndMapFrom(Collection<T> collection, Predicate<T> predicate, Function<T, ObjectMask> mapFunction)	Creates a new collection by filtering an iterable and then mapping it to ObjectMask.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.filterAndMapWithIndexFrom(List<T> list, Predicate<T> predicate, Class<? extends E> throwableClass, CheckedBiFunction<T, Integer, ObjectMask, E> mapFunctionWithIndex)	Creates a new collection by filtering a list and then mapping from it to ObjectMask.
ObjectCollection	ObjectMaskStream.filterExclude(Predicate<ObjectMask> predicate)	Filters a ObjectCollection to exclude certain items based on a predicate
ObjectCollection	ObjectMaskStream.filterSubset(Predicate<ObjectMask> predicate, Collection<Integer> indices)	Like ObjectMaskStream.filter(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>) but only operates on certain indices of the collection.
Stream<ObjectMask>	ObjectMaskStream.filterSubsetStream(Predicate<ObjectMask> predicate, Collection<Integer> indices)	Like ObjectMaskStream.filterSubset(java.util.function.Predicate<org.anchoranalysis.image.voxel.object.ObjectMask>, java.util.Collection<java.lang.Integer>) but returns a stream rather than a ObjectCollection.
<E extends Exception> ObjectCollection	ObjectMaskStream.flatMap(Class<? extends Exception> throwableClass, CheckedFunction<ObjectMask, ObjectCollection, E> mapFunction)	Like a typical flatMap() operation but accepts a mapping function that throws a checked exception.
ObjectCollection	ObjectMaskStream.flatMap(Function<ObjectMask, ObjectCollection> mapFunction)	Creates a new ObjectCollection after mapping each item to several others.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFromCollection(Stream<T> stream, Class<? extends Exception> throwableClass, CheckedFunction<T, Stream<? extends ObjectMask>, E> mapFunction)	Creates a new ObjectCollection by flatMapping an incoming stream to Collection<ObjectMask> and rethrowing any exception during mapping.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.flatMapFromStream(Stream<T> stream, Class<? extends Exception> throwableClass, CheckedFunction<T, Stream<ObjectMask>, E> mapFunction)	Creates a new collection by flat-mapping an incoming stream to ObjectCollection and rethrowing any exception during mapping.
static ObjectCollection	ObjectCollectionFactory.fromRepeated(int repeats, Supplier<ObjectMask> createObjectMask)	Creates a new collection by repeatedly calling a function to create a single ObjectMask.
static ObjectCollection	ObjectCollectionFactory.fromSet(Set<ObjectMask> set)	Creates a new collection from a set of ObjectMask.
<E extends Exception> ObjectCollection	ObjectMaskStream.map(CheckedFunction<ObjectMask, ObjectMask, E> mapFunction)	Creates a new ObjectCollection after mapping each item to another.
<E extends Exception> ObjectCollection	ObjectMaskStream.map(CheckedFunction<ObjectMask, ObjectMask, E> mapFunction)	Creates a new ObjectCollection after mapping each item to another.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFrom(Iterable<T> iterable, Class<? extends E> throwableClass, CheckedFunction<T, ObjectMask, E> mapFunction)	Creates a new collection by mapping an Iterable to ObjectMask.
static <T> ObjectCollection	ObjectCollectionFactory.mapFrom(Iterable<T> iterable, Function<T, ObjectMask> mapFunction)	Creates a new collection by mapping an Iterable to ObjectMask.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterable<T> iterable, Class<? extends Exception> throwableClass, CheckedFunction<T, Optional<ObjectMask>, E> mapFunction)	Creates a new collection by mapping an Iterable to Optional.
static <T> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterable<T> iterable, Function<T, Optional<ObjectMask>> mapFunction)	Creates a new collection by mapping an Iterable to Optional.
static <T, E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterator<T> iterator, Class<? extends Exception> throwableClass, CheckedFunction<T, Optional<ObjectMask>, E> mapFunction)	Creates a new collection by mapping an Iterator to Optional.
static <T> ObjectCollection	ObjectCollectionFactory.mapFromOptional(Iterator<T> iterator, Function<T, Optional<ObjectMask>> mapFunction)	Creates a new collection by mapping an Iterator to Optional.
static <E extends Exception> ObjectCollection	ObjectCollectionFactory.mapFromRange(int startInclusive, int endExclusive, Class<? extends Exception> throwableClass, CheckedIntFunction<ObjectMask, E> mapFunction)	Creates a new collection by mapping integers (from a range) each to a ObjectMask.
static ObjectCollection	ObjectCollectionFactory.mapFromRange(int startInclusive, int endExclusive, IntFunction<ObjectMask> mapFunction)	Creates a new collection by mapping integers (from a range) each to a ObjectMask.
<T, E extends Exception> List<T>	ObjectMaskStream.mapToList(CheckedFunction<ObjectMask, T, E> mapFunction)	Creates a new List after mapping each item to another type.
<T, E extends Exception> List<T>	ObjectMaskStream.mapToListOptional(CheckedFunction<ObjectMask, Optional<T>, E> mapFunction)	Creates a new List after mapping each item to another (optional) type
<T, E extends Exception> SortedSet<T>	ObjectMaskStream.mapToSortedSet(CheckedFunction<ObjectMask, T, E> mapFunction)	Creates a new SortedSet after mapping each item to another type.
OptionalInt	ObjectMaskStream.maxAsInt(ToIntFunction<ObjectMask> function)	Finds the maximum value of a function applied to each object in the collection.
OptionalInt	ObjectMaskStream.minAsInt(ToIntFunction<ObjectMask> function)	Finds the minimum value of a function applied to each object in the collection.

Constructor parameters in org.anchoranalysis.image.voxel.object with type arguments of type ObjectMask

Modifier	Constructor	Description
	IntersectingObjects(Collection<T> elements, Function<T, ObjectMask> extractObject)	Creates an r-tree for particular objects, as extracted from elements.
	ObjectCollection(ArrayList<ObjectMask> objects)	Creates with the underlying list.
	ObjectCollection(Stream<ObjectMask> stream)	Creates with elements from a stream.

Uses of ObjectMask in org.anchoranalysis.image.voxel.object.morphological

Methods in org.anchoranalysis.image.voxel.object.morphological that return ObjectMask

Modifier and Type	Method	Description
static ObjectMask	MorphologicalDilation.dilate(ObjectMask object, Optional<Extent> extent, boolean useZ, int iterations, boolean bigNeighborhood)	Dilates an ObjectMask, growing the bounding-box as necessary.
static ObjectMask	MorphologicalErosion.erode(ObjectMask object, int iterations, boolean useZ)	Performs a morphological erosion on an ObjectMask.
static ObjectMask	MorphologicalErosion.erode(ObjectMask object, int iterations, boolean useZ, Optional<AcceptIterationPredicate> postcondition)	Performs a morphological erosion on an ObjectMask - with a postcondition.

Methods in org.anchoranalysis.image.voxel.object.morphological with parameters of type ObjectMask

Modifier and Type	Method	Description
static ObjectMask	MorphologicalDilation.dilate(ObjectMask object, Optional<Extent> extent, boolean useZ, int iterations, boolean bigNeighborhood)	Dilates an ObjectMask, growing the bounding-box as necessary.
static ObjectMask	MorphologicalErosion.erode(ObjectMask object, int iterations, boolean useZ)	Performs a morphological erosion on an ObjectMask.
static ObjectMask	MorphologicalErosion.erode(ObjectMask object, int iterations, boolean useZ, Optional<AcceptIterationPredicate> postcondition)	Performs a morphological erosion on an ObjectMask - with a postcondition.

Uses of ObjectMask in org.anchoranalysis.image.voxel.thresholder

Method parameters in org.anchoranalysis.image.voxel.thresholder with type arguments of type ObjectMask

Modifier and Type	Method	Description
static BinaryVoxels<UnsignedByteBuffer>	VoxelsThresholder.threshold(VoxelsUntyped voxels, float level, BinaryValuesByte binaryValues, Optional<ObjectMask> objectMask, boolean alwaysDuplicate)	Applies thresholding to VoxelsUntyped.