Package org.anchoranalysis.io.input

Class InputContextParameters

Object
org.anchoranalysis.io.input.InputContextParameters
public class InputContextParameters
extends Object
Additional parameters that offer context for many beans that provide input-functions.
Author:
Owen Feehan

  • Constructor Details

  • Method Details

    • setInputDirectory

      public void setInputDirectory​(Optional<Path> inputDirectory) throws IOException
      If defined, a directory which can be used by beans to find input.

      This should always be an absolute path, never a relative one.

      Parameters:
      inputDirectory - the absolute path of the input-directory.
      Throws:
      IOException - if the path passed is not absolute.

    • assignInputDirectory

      public void assignInputDirectory​(Optional<Path> inputDirectory)
      Sets an input-directory.

      If defined, The path will be converted to an absolute path, if it hasn't been already, based upon the current working directory.

      Parameters:
      inputDirectory - the input-directory to an assign

    • assignFilterGlob

      public void assignFilterGlob​(String glob)
      Assigns a glob that can be used by beans to filter input.

      The syntax should be from Java's getPathMatcher.

      Parameters:
      glob - a string describing a glob in the syntax expected by Java.

    • assignIdentifierSubrange

      public void assignIdentifierSubrange​(IndexRangeNegative identifierSubrange)
      If defined, this indicates and specifies only a subset of the elements of the identifier to use.
      Parameters:
      identifierSubrange - if defined, this indicates and specifies only a subset of the naming-elements to use.

    • assignInputFilterExtensionsIfMissing

      public void assignInputFilterExtensionsIfMissing​(Supplier<Optional<StringSetTrie>> filterExtensions)
      Assigns extensions that can be used filter inputs, but only when no extensions have already been set.
      Parameters:
      filterExtensions - the extensions sued to filter inputs (without the leading period).

    • assignInputFilterExtensions

      public void assignInputFilterExtensions​(StringSetTrie filterExtensions)
      Assigns extensions that can be used filter inputs, but irrespective of whether extensions have already been set.

      Any existing input-filter-extensions are repalced with filterExtensions.

      Parameters:
      filterExtensions - the extensions sued to filter inputs (without the leading period).

    • assignRelativeForIdentifier

      public void assignRelativeForIdentifier()
      Specify that the entire filename or relative path (excluding extension) is used to determine a unique identifier.

    • assignFixedLimit

      public void assignFixedLimit​(int fixedLimit)
      Assigns a fixed upper limit of number of inputs.
      Parameters:
      fixedLimit - the maximum number of inputs allowed.

    • assignRatioLimit

      public void assignRatioLimit​(double ratioLimit)
      Assigns a fixed upper limit that is a ratio of the number of inputs allowed.
      Parameters:
      ratioLimit - the maximum number of inputs allowed.

    • assignPaths

      public void assignPaths​(List<Path> paths)
      Assigns a specific list of paths that are used for the inputs.
      Parameters:
      paths - the paths.

    • assignShuffle

      public void assignShuffle()
      Indicates that the order of the inputs should be shuffled (randomized).

    • getInputPaths

      public Optional<List<Path>> getInputPaths()
      A list of paths referring to specific inputs.

    • setInputPaths

      public void setInputPaths​(Optional<List<Path>> inputPaths)
      A list of paths referring to specific inputs.

    • getInputDirectory

      public Optional<Path> getInputDirectory()
      If defined, a directory which can be used by beans to find input.

    • getInputFilterGlob

      public Optional<String> getInputFilterGlob()
      A glob that can be used by beans to filter input.

      It requires the syntax of Java's getPathMatcher.

    • setInputFilterGlob

      public void setInputFilterGlob​(Optional<String> inputFilterGlob)
      A glob that can be used by beans to filter input.

      It requires the syntax of Java's getPathMatcher.

    • getInputFilterExtensions

      public Optional<StringSetTrie> getInputFilterExtensions()
      A trie of extensions that can be used filter inputs.

    • setInputFilterExtensions

      public void setInputFilterExtensions​(Optional<StringSetTrie> inputFilterExtensions)
      A trie of extensions that can be used filter inputs.

    • getDebugModeParameters

      public Optional<DebugModeParameters> getDebugModeParameters()
      Parameters for debug-mode (only defined if we are in debug mode).

    • setDebugModeParameters

      public void setDebugModeParameters​(Optional<DebugModeParameters> debugModeParameters)
      Parameters for debug-mode (only defined if we are in debug mode).

    • isRelativeForIdentifier

      public boolean isRelativeForIdentifier()
      If true, the entire filename or relative path (excluding extension) is used to determine a unique identifier.

    • setRelativeForIdentifier

      public void setRelativeForIdentifier​(boolean relativeForIdentifier)
      If true, the entire filename or relative path (excluding extension) is used to determine a unique identifier.

    • isShuffle

      public boolean isShuffle()
      If true, the order of the inputs are shuffled (randomized).

    • setShuffle

      public void setShuffle​(boolean shuffle)
      If true, the order of the inputs are shuffled (randomized).

    • getLimitUpper

      public Optional<io.vavr.control.Either<Integer,​Double>> getLimitUpper()
      If defined, an upper limit that is imposed on the number of inputs.

      When an Integer is is a fixed number of inputs.

      When a Double it is a ratio of the total number of inputs (and should only be in the interval (0.0, 1.0)).

    • setLimitUpper

      public void setLimitUpper​(Optional<io.vavr.control.Either<Integer,​Double>> limitUpper)
      If defined, an upper limit that is imposed on the number of inputs.

      When an Integer is is a fixed number of inputs.

      When a Double it is a ratio of the total number of inputs (and should only be in the interval (0.0, 1.0)).

    • getIdentifierSubrange

      public Optional<IndexRangeNegative> getIdentifierSubrange()
      If defined, this indicates and specifies only a subset of the naming-elements to use.

    • setIdentifierSubrange

      public void setIdentifierSubrange​(Optional<IndexRangeNegative> identifierSubrange)
      If defined, this indicates and specifies only a subset of the naming-elements to use.