Uses of Class
org.anchoranalysis.mpp.feature.input.FeatureInputPairMemo

Packages that use FeatureInputPairMemo

Package	Description
org.anchoranalysis.mpp.feature.addcriteria	Criteria for adding edges during optimization of marked-point-processes.
org.anchoranalysis.mpp.feature.bean.energy.element	Implementations and helper classes for calculating energy during an energy-minimization optimization scheme.
org.anchoranalysis.mpp.feature.bean.energy.scheme	Creating EnergySchemes.
org.anchoranalysis.mpp.feature.energy.scheme	Factorized form of storing the energy during an energy-minimization optimization scheme.

Uses of FeatureInputPairMemo in org.anchoranalysis.mpp.feature.addcriteria

Subinterfaces with type arguments of type FeatureInputPairMemo in org.anchoranalysis.mpp.feature.addcriteria

Modifier and Type	Interface	Description
interface	AddCriteria<T>	Criteria for adding edges between marks in a graph-based model.

Methods in org.anchoranalysis.mpp.feature.addcriteria that return types with arguments of type FeatureInputPairMemo

Modifier and Type	Method	Description
Optional<FeatureList<FeatureInputPairMemo>>	AddCriteriaEnergyPair.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	AddCriteriaNever.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	AddCriteriaOr.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	ArbitraryPointCommon.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	BoundingBoxIntersection.orderedListOfFeatures()

Method parameters in org.anchoranalysis.mpp.feature.addcriteria with type arguments of type FeatureInputPairMemo

Modifier and Type	Method	Description
Optional<T>	AddCriteria.generateEdge(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, EnergyStack energyStack, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)	Generates an edge between two marks based on the defined criteria.
Optional<EnergyPair>	AddCriteriaEnergyPair.generateEdge(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, EnergyStack energyStack, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
Optional<T>	AddCriteriaNever.generateEdge(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, EnergyStack energyStack, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
Optional<MarkPair<Mark>>	AddCriteriaPair.generateEdge(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, EnergyStack energyStack, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
boolean	AddCriteriaOr.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
abstract boolean	AddCriteriaPair.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)	Determines whether to include a pair of marks based on specific criteria.
boolean	ArbitraryPointCommon.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
boolean	BoundingBoxIntersection.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)

Constructor parameters in org.anchoranalysis.mpp.feature.addcriteria with type arguments of type FeatureInputPairMemo

Modifier	Constructor	Description
	AddCriteriaEnergyPair(FeatureList<FeatureInputPairMemo> energyPairs, AddCriteriaPair pairAddCriteria)	Creates an AddCriteriaEnergyPair with specified energy pairs and add criteria.

Uses of FeatureInputPairMemo in org.anchoranalysis.mpp.feature.bean.energy.element

Subclasses with type arguments of type FeatureInputPairMemo in org.anchoranalysis.mpp.feature.bean.energy.element

Modifier and Type	Class	Description
class	AsSingle	Extracts one of the memos from the pair, and processes as a FeatureSingleMemo
class	CalculateDeriveSingleMemoFromPair	Derives a FeatureInputSingleMemo from a FeatureInputPairMemo.
class	FeaturePairMemo	An abstract base class for features that operate on pairs of memoized objects.

Methods in org.anchoranalysis.mpp.feature.bean.energy.element with parameters of type FeatureInputPairMemo

Modifier and Type	Method	Description
protected FeatureInputSingleMemo	CalculateDeriveSingleMemoFromPair.execute(FeatureInputPairMemo input)

Method parameters in org.anchoranalysis.mpp.feature.bean.energy.element with type arguments of type FeatureInputPairMemo

Modifier and Type	Method	Description
double	AsSingle.calculate(FeatureCalculationInput<FeatureInputPairMemo> input)

Uses of FeatureInputPairMemo in org.anchoranalysis.mpp.feature.bean.energy.scheme

Methods in org.anchoranalysis.mpp.feature.bean.energy.scheme that return types with arguments of type FeatureInputPairMemo

Modifier and Type	Method	Description
FeatureListProvider<FeatureInputPairMemo>	EnergySchemeCreatorByElement.getElemPairCreator()	Creates features for pairs of elements.

Method parameters in org.anchoranalysis.mpp.feature.bean.energy.scheme with type arguments of type FeatureInputPairMemo

Modifier and Type	Method	Description
void	EnergySchemeCreatorByElement.setElemPairCreator(FeatureListProvider<FeatureInputPairMemo> elemPairCreator)	Creates features for pairs of elements.

Uses of FeatureInputPairMemo in org.anchoranalysis.mpp.feature.energy.scheme

Methods in org.anchoranalysis.mpp.feature.energy.scheme that return types with arguments of type FeatureInputPairMemo

Modifier and Type	Method	Description
FeatureList<FeatureInputPairMemo>	EnergyScheme.getPair()	Features for pairs of elements (clique-size==2).