Index (anchor-overlay 1.0.0 API)

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A

add(Overlay) - Method in class org.anchoranalysis.overlay.collection.OverlayCollection: Append an overlay to the end of the list.
add(Overlay, RGBColor) - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: Append an overlay and its respective color to the end of the list..

B

box(DrawOverlay, Dimensions) - Method in class org.anchoranalysis.overlay.object.OverlayObjectMask
box(DrawOverlay, Dimensions) - Method in class org.anchoranalysis.overlay.Overlay: A bounding-box around the overlay.

C

ColoredOverlayCollection - Class in org.anchoranalysis.overlay.collection: Like a OverlayCollection but additionally associates a color with each overlay.
ColoredOverlayCollection() - Constructor for class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: Create an empty collection.
ColoredOverlayCollection(OverlayCollection, ColorList) - Constructor for class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: Creates a new ColoredOverlayCollection instance.
colorFor(ObjectWithProperties, int) - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: A color for a particular object
createObject(Dimensions, BinaryValuesByte) - Method in class org.anchoranalysis.overlay.object.OverlayObjectMask
createObject(Dimensions, BinaryValuesByte) - Method in class org.anchoranalysis.overlay.Overlay: Derives an object-mask representation of the overlay to be drawn with overlayWriter.

D

drawCollection(ObjectCollectionWithProperties, RGBStack, ObjectDrawAttributes) - Method in class org.anchoranalysis.overlay.bean.DrawObject: Writes object-masks onto of a RGBStack - across all of the stack.
drawCollection(ObjectCollectionWithProperties, RGBStack, ObjectDrawAttributes, BoundingBox) - Method in class org.anchoranalysis.overlay.bean.DrawObject: Writes object-masks onto of a RGBStack - within a bounding box only.
DrawObject - Class in org.anchoranalysis.overlay.bean: Draws a representation of an ObjectMask on a RGBStack.
DrawObject() - Constructor for class org.anchoranalysis.overlay.bean.DrawObject
DrawOverlay - Class in org.anchoranalysis.overlay.writer: Draws an ovleray onto a RGBStack
DrawOverlay(DrawObject) - Constructor for class org.anchoranalysis.overlay.writer.DrawOverlay: Creates a new DrawOverlay instance.
drawOverlays(ColoredOverlayCollection, RGBStack, IdentifierGetter<Overlay>) - Method in class org.anchoranalysis.overlay.writer.DrawOverlay: Draw a collection of colored-overlays on top of a RGBStack.
drawSingle(ObjectWithProperties, RGBStack, ObjectDrawAttributes, int, BoundingBox) - Method in class org.anchoranalysis.overlay.bean.DrawObject: Draws a single-object on top of a RGB-stack.

E

equals(Object) - Method in class org.anchoranalysis.overlay.object.OverlayObjectMask
equals(Object) - Method in class org.anchoranalysis.overlay.Overlay
equals(Object) - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes

G

get(int) - Method in class org.anchoranalysis.overlay.collection.OverlayCollection: Access a particular element in the collection by index.
getColor(int) - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: Access a particular color in the collection by index.
getColorIDGetter() - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: Gets a color ID associated with the object
getColorIndex() - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: Colors for a given index
getColors() - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: The list of colors, each element corresponding to overlays.
getIdGetter() - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: Gets a unique ID associated with the object
getObject() - Method in class org.anchoranalysis.overlay.object.OverlayObjectMask: The ObjectMask to draw.
getOverlay(int) - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: Access a particular Overlay in the collection by index.
getOverlays() - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: The collection of overlays, each element corresponding to colors.

H

hashCode() - Method in class org.anchoranalysis.overlay.object.OverlayObjectMask
hashCode() - Method in class org.anchoranalysis.overlay.Overlay
hashCode() - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes

I

idFor(ObjectWithProperties, int) - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: ID for a particular object
iterator() - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection
iterator() - Method in class org.anchoranalysis.overlay.collection.OverlayCollection

O

ObjectDrawAttributes - Class in org.anchoranalysis.overlay.writer: A means of extracting attributes associated with a particular object (e.g.
ObjectDrawAttributes(ColorIndex) - Constructor for class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: Creates with a specific color-index and uses the iteration-index as both the ID and color-ID
ObjectDrawAttributes(ColorIndex, IdentifierGetter<ObjectWithProperties>, IdentifierGetter<ObjectWithProperties>) - Constructor for class org.anchoranalysis.overlay.writer.ObjectDrawAttributes: Creates a new ObjectDrawAttributes instance.
org.anchoranalysis.overlay - package org.anchoranalysis.overlay: Overlays and related classes involving drawing entities on top of an image.
org.anchoranalysis.overlay.bean - package org.anchoranalysis.overlay.bean: Beans relating to drawing an Overlay on an image.
org.anchoranalysis.overlay.collection - package org.anchoranalysis.overlay.collection: Collections of Overlays.
org.anchoranalysis.overlay.object - package org.anchoranalysis.overlay.object: An implementation of an Overlay that draws an ObjectMask on an image.
org.anchoranalysis.overlay.writer - package org.anchoranalysis.overlay.writer: Drawing an overlay on an image.
Overlay - Class in org.anchoranalysis.overlay: An entity that will eventually be drawn on top of an image.
Overlay() - Constructor for class org.anchoranalysis.overlay.Overlay
OverlayCollection - Class in org.anchoranalysis.overlay.collection: A collection of Overlay objects.
OverlayCollection() - Constructor for class org.anchoranalysis.overlay.collection.OverlayCollection: Creates an empty collection.
OverlayCollection(Stream<Overlay>) - Constructor for class org.anchoranalysis.overlay.collection.OverlayCollection: Creates the collection from a stream of Overlays.
OverlayObjectMask - Class in org.anchoranalysis.overlay.object: An implementation of Overlay that draws an ObjectMask on an image.
OverlayObjectMask(ObjectMask, int) - Constructor for class org.anchoranalysis.overlay.object.OverlayObjectMask: Creates with a particular ObjectMask and identifier.

S

size() - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: The total number of elements in the list.
size() - Method in class org.anchoranalysis.overlay.collection.OverlayCollection: The total number of elements in the list.
subsetWhereBoxIntersects(Dimensions, DrawOverlay, List<BoundingBox>) - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection: Find overlays whose bounding-boxes intersect with any of the boxes in toIntersectWith.

T

toString() - Method in class org.anchoranalysis.overlay.collection.ColoredOverlayCollection
toString() - Method in class org.anchoranalysis.overlay.writer.ObjectDrawAttributes

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