All Classes
| Class | Description |
|---|---|
| AggregateAnnotations<S extends org.anchoranalysis.annotation.io.bean.AnnotatorStrategy> |
Aggregates many per-image annotations together in form of a CSV file.
|
| AnnotationAggregateCSVGenerator |
Generates a CSV file containing aggregated annotation data.
|
| AnnotationComparisonAssigner<T extends org.anchoranalysis.annotation.io.assignment.Assignment<org.anchoranalysis.image.voxel.object.ObjectMask>> |
Compares similar object-sets produced from two different sources.
|
| AnnotationComparisonInput<T extends org.anchoranalysis.io.input.InputFromManager> |
Input for annotation comparison, containing sources to compare and associated metadata.
|
| AnnotationComparisonInputManager<T extends org.anchoranalysis.io.input.InputFromManager> |
An input manager for annotation comparison that extends
InputManagerWithStackReader. |
| AnnotationLabel |
Represents a label used for annotation, with associated metadata.
|
| CompareAnnotations<T extends org.anchoranalysis.annotation.io.assignment.Assignment<org.anchoranalysis.image.voxel.object.ObjectMask>> |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
| ComparisonSharedState<T extends org.anchoranalysis.annotation.io.assignment.Assignment<org.anchoranalysis.image.voxel.object.ObjectMask>> |
Shared state for comparison operations, including grouping and statistics.
|
| FeatureCostAssigner |
Assigns an objects from one set of objects to another based upon a cost (degree of overlap).
|
| FromAnnotations<T extends org.anchoranalysis.annotation.io.bean.AnnotatorStrategy> |
Provides files associated with annotations.
|
| GroupedAnnotationLabels |
A set of
AnnotationLabels partitioned into their unique groups. |
| ImageCounter<T> |
Counts images on aggregate, some with associated annotations, others without.
|
| ImageCounterList<T extends org.anchoranalysis.annotation.io.assignment.Assignment<org.anchoranalysis.image.voxel.object.ObjectMask>> |
Allows operations to be applied to several
ImageCounters collectively. |
| ImageCounterWithStatistics<T> |
Like
ImageCounter but also exports statistics. |
| ImageLabelStrategy |
Assigns a single label per image, as a whole.
|
| MarkProposerStrategy |
Annotates each image with a mark using a mark proposer and points fitter.
|
| MaskAsObject |
Loads
Mask to compared, converting it into an ObjectMask. |
| MaskIntersectionAssigner |
No outputs are produced.
|
| Objects |
An
ObjectCollection to be compared against something else. |
| ObjectsToCompare |
Holds two
ObjectCollections for comparison purposes. |
| PathFromGenerator |
Utility class for deriving paths from a generator.
|
| ReadAnnotationFromFile |
Utility class for reading
ImageLabelAnnotation from a file. |
| SinglePathStrategy |
A base class for implementations of
AnnotatorStrategy where a single unique path exists
for every annotation. |