Package org.anchoranalysis.plugin.annotation.bean.comparison.assigner

Class AnnotationComparisonAssigner<T extends org.anchoranalysis.annotation.io.assignment.Assignment<org.anchoranalysis.image.voxel.object.ObjectMask>>

Object

org.anchoranalysis.bean.AnchorBean<AnnotationComparisonAssigner<T>>

org.anchoranalysis.plugin.annotation.bean.comparison.assigner.AnnotationComparisonAssigner<T>

Type Parameters:

T - the type of Assignment used for object masks.

Direct Known Subclasses:

FeatureCostAssigner, MaskIntersectionAssigner

public abstract class AnnotationComparisonAssigner<T extends org.anchoranalysis.annotation.io.assignment.Assignment<org.anchoranalysis.image.voxel.object.ObjectMask>>
extends org.anchoranalysis.bean.AnchorBean<AnnotationComparisonAssigner<T>>

Compares similar object-sets produced from two different sources.

An assignment is created indicating the differences and similarities between the object-sets.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
AnnotationComparisonAssigner()

Method Summary

Modifier and Type	Method	Description
abstract void	addDefaultOutputs(org.anchoranalysis.io.output.enabled.OutputEnabledMutable outputs)	Adds any default outputs that should occur from the assigner.
abstract T	createAssignment(ObjectsToCompare objectsToCompare, org.anchoranalysis.image.core.dimensions.Dimensions dimensions, boolean useMIP, org.anchoranalysis.io.output.outputter.InputOutputContext context)	Creates an assignment based on the objects to compare.
abstract ImageCounterWithStatistics<T>	groupForKey(String key)	Gets the ImageCounterWithStatistics for a specific key.
abstract boolean	moreThanOneObject()	Checks if more than one object can exist in the assignment.

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AnnotationComparisonAssigner

public AnnotationComparisonAssigner()

Method Details

createAssignment

public abstract T createAssignment(ObjectsToCompare objectsToCompare, org.anchoranalysis.image.core.dimensions.Dimensions dimensions, boolean useMIP, org.anchoranalysis.io.output.outputter.InputOutputContext context) throws org.anchoranalysis.core.exception.CreateException

Creates an assignment based on the objects to compare.

Parameters:

objectsToCompare - the objects to compare.

dimensions - the dimensions of the image.

useMIP - whether to use Maximum Intensity Projection.

context - the input-output context.

Returns:

the created assignment.

Throws:

org.anchoranalysis.core.exception.CreateException - if the assignment cannot be created.

groupForKey

public abstract ImageCounterWithStatistics<T> groupForKey(String key)

Gets the ImageCounterWithStatistics for a specific key.

Parameters:

key - the key to get the group for.

Returns:

the ImageCounterWithStatistics for the given key.

moreThanOneObject

public abstract boolean moreThanOneObject()

Checks if more than one object can exist in the assignment.

Returns:

true if more than one object can exist, false otherwise.

addDefaultOutputs

public abstract void addDefaultOutputs(org.anchoranalysis.io.output.enabled.OutputEnabledMutable outputs)

Adds any default outputs that should occur from the assigner.

Parameters:

outputs - the OutputEnabledMutable to add the default outputs to.