Package org.anchoranalysis.plugin.annotation.bean.comparison.assigner

Class MaskIntersectionAssigner

Object
org.anchoranalysis.bean.AnchorBean<AnnotationComparisonAssigner<T>>
org.anchoranalysis.plugin.annotation.bean.comparison.assigner.AnnotationComparisonAssigner<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection>
org.anchoranalysis.plugin.annotation.bean.comparison.assigner.MaskIntersectionAssigner
public class MaskIntersectionAssigner
extends AnnotationComparisonAssigner<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection>
No outputs are produced.
Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    MaskIntersectionAssigner()  

  • Method Summary

    Modifier and Type Method Description
    void addDefaultOutputs​(org.anchoranalysis.io.output.enabled.OutputEnabledMutable outputs)
    Adds any default outputs that should occur from the assigner.
    org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection createAssignment​(ObjectsToCompare objectsToCompare, org.anchoranalysis.image.core.dimensions.Dimensions dimensions, boolean useMIP, org.anchoranalysis.io.output.outputter.InputOutputContext context)
    Creates an assignment based on the objects to compare.
    ImageCounterWithStatistics<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection> groupForKey​(String key)
    Gets the ImageCounterWithStatistics for a specific key.
    boolean moreThanOneObject()
    Checks if more than one object can exist in the assignment.

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • createAssignment

      public org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection createAssignment​(ObjectsToCompare objectsToCompare, org.anchoranalysis.image.core.dimensions.Dimensions dimensions, boolean useMIP, org.anchoranalysis.io.output.outputter.InputOutputContext context) throws org.anchoranalysis.core.exception.CreateException
      Description copied from class: AnnotationComparisonAssigner
      Creates an assignment based on the objects to compare.
      Specified by:
      createAssignment in class AnnotationComparisonAssigner<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection>
      Parameters:
      objectsToCompare - the objects to compare.
      dimensions - the dimensions of the image.
      useMIP - whether to use Maximum Intensity Projection.
      context - the input-output context.
      Returns:
      the created assignment.
      Throws:
      org.anchoranalysis.core.exception.CreateException - if the assignment cannot be created.

    • groupForKey

      public ImageCounterWithStatistics<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection> groupForKey​(String key)
      Description copied from class: AnnotationComparisonAssigner
      Gets the ImageCounterWithStatistics for a specific key.
      Specified by:
      groupForKey in class AnnotationComparisonAssigner<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection>
      Parameters:
      key - the key to get the group for.
      Returns:
      the ImageCounterWithStatistics for the given key.

    • moreThanOneObject

      public boolean moreThanOneObject()
      Description copied from class: AnnotationComparisonAssigner
      Checks if more than one object can exist in the assignment.
      Specified by:
      moreThanOneObject in class AnnotationComparisonAssigner<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection>
      Returns:
      true if more than one object can exist, false otherwise.

    • addDefaultOutputs

      public void addDefaultOutputs​(org.anchoranalysis.io.output.enabled.OutputEnabledMutable outputs)
      Description copied from class: AnnotationComparisonAssigner
      Adds any default outputs that should occur from the assigner.
      Specified by:
      addDefaultOutputs in class AnnotationComparisonAssigner<org.anchoranalysis.annotation.io.assignment.ObjectVoxelIntersection>
      Parameters:
      outputs - the OutputEnabledMutable to add the default outputs to.