Package org.anchoranalysis.plugin.image.feature.bean.list.permute

Class PermuteFirstSecondOrder<T extends org.anchoranalysis.feature.input.FeatureInputDictionary>

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,org.anchoranalysis.feature.initialization.FeatureRelatedInitialization>

org.anchoranalysis.feature.bean.FeatureRelatedBean<B>

org.anchoranalysis.feature.bean.provider.FeatureProviderBean<org.anchoranalysis.feature.bean.list.FeatureListProvider<T>,org.anchoranalysis.feature.bean.list.FeatureList<T>>

org.anchoranalysis.feature.bean.list.FeatureListProvider<T>

org.anchoranalysis.plugin.image.feature.bean.list.permute.PermuteFeatureBase<T>

org.anchoranalysis.plugin.image.feature.bean.list.permute.PermuteFeatureSequenceInteger<T>

org.anchoranalysis.plugin.image.feature.bean.list.permute.PermuteFirstSecondOrder<T>

Type Parameters:

T - the type of feature input

All Implemented Interfaces:

org.anchoranalysis.bean.Provider<org.anchoranalysis.feature.bean.list.FeatureList<T>>

Direct Known Subclasses:

PermuteGaussianScore, PermuteZScore

public abstract class PermuteFirstSecondOrder<T extends org.anchoranalysis.feature.input.FeatureInputDictionary>
extends PermuteFeatureSequenceInteger<T>

Permutes a feature by applying first and second order statistical operations.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static interface	PermuteFirstSecondOrder.CreateFirstSecondOrder<T extends org.anchoranalysis.feature.input.FeatureInput>	Functional interface for creating first and second order statistical operations.

Constructor Summary

Constructors

Constructor	Description
PermuteFirstSecondOrder(PermuteFirstSecondOrder.CreateFirstSecondOrder<T> factory, double minRange, double maxRange)

Method Summary

Modifier and Type	Method	Description
protected org.anchoranalysis.bean.permute.property.PermutePropertySequenceInteger	configurePermuteProperty(org.anchoranalysis.bean.permute.property.PermutePropertySequenceInteger permuteProperty)	Configures the PermutePropertySequenceInteger for this permutation.
protected PermuteFeature<Integer,T>	createDelegate(org.anchoranalysis.feature.bean.Feature<T> feature)	Creates a delegate PermuteFeature for the given feature.
boolean	isParamPrefixAppendNumber()	If true, the constant is appended to the param prefix (a dot and a number).
void	setParamPrefixAppendNumber(boolean paramPrefixAppendNumber)	If true, the constant is appended to the param prefix (a dot and a number).

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.list.permute.PermuteFeatureSequenceInteger

checkMisconfigured, createParam, createPermutedFeaturesFor, getParamPrefix, getPermuteProperty, setParamPrefix, setPermuteProperty

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.list.permute.PermuteFeatureBase

get, getFeature, setFeature

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

PermuteFirstSecondOrder

public PermuteFirstSecondOrder(PermuteFirstSecondOrder.CreateFirstSecondOrder<T> factory, double minRange, double maxRange)

Method Details

createDelegate

protected PermuteFeature<Integer,T> createDelegate(org.anchoranalysis.feature.bean.Feature<T> feature) throws org.anchoranalysis.bean.xml.exception.ProvisionFailedException

Description copied from class: PermuteFeatureSequenceInteger

Creates a delegate PermuteFeature for the given feature.

Specified by:

createDelegate in class PermuteFeatureSequenceInteger<T extends org.anchoranalysis.feature.input.FeatureInputDictionary>

Parameters:

feature - the feature to permute

Returns:

a new PermuteFeature instance

Throws:

org.anchoranalysis.bean.xml.exception.ProvisionFailedException - if the delegate cannot be created

configurePermuteProperty

protected org.anchoranalysis.bean.permute.property.PermutePropertySequenceInteger configurePermuteProperty(org.anchoranalysis.bean.permute.property.PermutePropertySequenceInteger permuteProperty)

Description copied from class: PermuteFeatureSequenceInteger

Configures the PermutePropertySequenceInteger for this permutation.

Specified by:

configurePermuteProperty in class PermuteFeatureSequenceInteger<T extends org.anchoranalysis.feature.input.FeatureInputDictionary>

Parameters:

permuteProperty - the property to configure

Returns:

the configured PermutePropertySequenceInteger

isParamPrefixAppendNumber

public boolean isParamPrefixAppendNumber()

If true, the constant is appended to the param prefix (a dot and a number).

setParamPrefixAppendNumber

public void setParamPrefixAppendNumber(boolean paramPrefixAppendNumber)

If true, the constant is appended to the param prefix (a dot and a number).