Package org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap

Class OverlapRelative

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputPairObjects>
org.anchoranalysis.image.feature.bean.object.pair.FeaturePairObjects
org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap.OverlapRelative
Direct Known Subclasses:
OverlapRelativeToFirst, OverlapRelativeToMaxVolume, OverlapRelativeToMerged, OverlapRelativeToSecond
public abstract class OverlapRelative
extends org.anchoranalysis.image.feature.bean.object.pair.FeaturePairObjects
Expresses the number of intersecting pixels between two objects as a ratio to a denominator.

The denominator is calculated by the abstract method calculateDenominator(org.anchoranalysis.image.feature.input.FeatureInputPairObjects).

Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    OverlapRelative()  

  • Method Summary

    Modifier and Type Method Description
    double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputPairObjects> input)  
    protected abstract int calculateDenominator​(org.anchoranalysis.image.feature.input.FeatureInputPairObjects input)
    Calculates the denominator for the overlap ratio.

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.pair.FeaturePairObjects

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      public double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputPairObjects> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputPairObjects>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • calculateDenominator

      protected abstract int calculateDenominator​(org.anchoranalysis.image.feature.input.FeatureInputPairObjects input)
      Calculates the denominator for the overlap ratio.
      Parameters:
      input - the FeatureInputPairObjects containing the two objects
      Returns:
      the calculated denominator value