Package org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Class SpecificEnergyChannelBase

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
org.anchoranalysis.plugin.image.feature.bean.object.single.energy.SpecificEnergyChannelBase
Direct Known Subclasses:
CountEqual
public abstract class SpecificEnergyChannelBase
extends org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
A base class for features that operate on a specific channel from the energy stack.

  • Constructor Summary

    Constructors 
    Constructor Description
    SpecificEnergyChannelBase()  

  • Method Summary

    Modifier and Type Method Description
    double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input)  
    protected abstract double calculateWithChannel​(org.anchoranalysis.image.voxel.object.ObjectMask object, org.anchoranalysis.image.core.channel.Channel channel)
    Calculates the feature value for a specific object and channel.
    int getEnergyIndex()
    Index of which channel in the energy-stack to select.
    void setEnergyIndex​(int energyIndex)
    Index of which channel in the energy-stack to select.

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      public double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • calculateWithChannel

      protected abstract double calculateWithChannel​(org.anchoranalysis.image.voxel.object.ObjectMask object, org.anchoranalysis.image.core.channel.Channel channel) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Calculates the feature value for a specific object and channel.
      Parameters:
      object - the ObjectMask representing the object of interest
      channel - the Channel from the energy stack to calculate the feature on
      Returns:
      the calculated feature value
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException - if the calculation fails

    • getEnergyIndex

      public int getEnergyIndex()
      Index of which channel in the energy-stack to select. 0 represents the first channel, 1 the second, and so on.

    • setEnergyIndex

      public void setEnergyIndex​(int energyIndex)
      Index of which channel in the energy-stack to select. 0 represents the first channel, 1 the second, and so on.