Package org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Class FeatureEnergyChannel

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.FeatureEnergyChannel
Direct Known Subclasses:
Intensity, IntensityMeanMaxSlice, IntensityMeanShellBase, TextureScore
public abstract class FeatureEnergyChannel
extends org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
A feature that uses a channel from the energy-stack as identified by an index.
Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    FeatureEnergyChannel()  

  • Method Summary

    Modifier and Type Method Description
    double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input)  
    protected abstract double calculateForChannel​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input, org.anchoranalysis.image.core.channel.Channel channel)
    Calculates the feature value for a specific channel in the energy stack.
    int getEnergyIndex()
    Index of channel to use in the energy-stack (0 is the first channel, 1 is second etc.)
    void setEnergyIndex​(int energyIndex)
    Index of channel to use in the energy-stack (0 is the first channel, 1 is second etc.)

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      public double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • calculateForChannel

      protected abstract double calculateForChannel​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input, org.anchoranalysis.image.core.channel.Channel channel) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Calculates the feature value for a specific channel in the energy stack.
      Parameters:
      input - the FeatureCalculationInput containing the FeatureInputSingleObject
      channel - the Channel from the energy stack to calculate the feature on
      Returns:
      the calculated feature value
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException - if the calculation fails

    • getEnergyIndex

      public int getEnergyIndex()
      Index of channel to use in the energy-stack (0 is the first channel, 1 is second etc.)

    • setEnergyIndex

      public void setEnergyIndex​(int energyIndex)
      Index of channel to use in the energy-stack (0 is the first channel, 1 is second etc.)