Package org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Class IntensityMeanShell

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,org.anchoranalysis.feature.initialization.FeatureInitialization>

org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>

org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.FeatureEnergyChannel

org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.IntensityMeanShellBase

org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.IntensityMeanShell

public class IntensityMeanShell
extends IntensityMeanShellBase

Constructs a 'shell' around an object by a number of dilation/erosion operations (not including the original object-mask) and measures the mean intensity of this shell

Constructor Summary

Constructors

Constructor	Description
IntensityMeanShell()

Method Summary

Modifier and Type	Method	Description
protected double	calculateForShell(org.anchoranalysis.image.voxel.object.ObjectMask object, org.anchoranalysis.image.core.channel.Channel channel)	Calculates the feature value for the given shell and channel.

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.IntensityMeanShellBase

calculateForChannel, checkMisconfigured, describeParameters, getEmptyValue, getEnergyIndexMask, getIterations, isInverse, isInverseMask, setEmptyValue, setEnergyIndexMask, setInverse, setInverseMask, setIterations

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.FeatureEnergyChannel

calculate, getEnergyIndex, setEnergyIndex

Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

inputType

Methods inherited from class org.anchoranalysis.feature.bean.Feature

assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

Methods inherited from class org.anchoranalysis.bean.AnchorBean

describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

IntensityMeanShell

public IntensityMeanShell()

Method Details

calculateForShell

protected double calculateForShell(org.anchoranalysis.image.voxel.object.ObjectMask object, org.anchoranalysis.image.core.channel.Channel channel) throws org.anchoranalysis.feature.calculate.FeatureCalculationException

Description copied from class: IntensityMeanShellBase

Calculates the feature value for the given shell and channel.

Specified by:

calculateForShell in class IntensityMeanShellBase

Parameters:

object - the ObjectMask representing the shell

channel - the Channel to calculate the feature on

Returns:

the calculated feature value

Throws:

org.anchoranalysis.feature.calculate.FeatureCalculationException - if the calculation fails