Package org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Class TextureScore

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.FeatureEnergyChannel
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.TextureScore
public class TextureScore
extends FeatureEnergyChannel
From Page 727 from Lin et al (A Multi-Model Approach to Simultaneous Segmentation and Classification of Heterogeneous Populations of Cell Nuclei
Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    TextureScore()  

  • Method Summary

    Modifier and Type Method Description
    protected double calculateForChannel​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input, org.anchoranalysis.image.core.channel.Channel channel)
    Calculates the feature value for a specific channel in the energy stack.
    int getEnergyIndexGradient()  
    void setEnergyIndexGradient​(int energyIndexGradient)  

    Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.FeatureEnergyChannel

    calculate, getEnergyIndex, setEnergyIndex

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculateForChannel

      protected double calculateForChannel​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input, org.anchoranalysis.image.core.channel.Channel channel) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Description copied from class: FeatureEnergyChannel
      Calculates the feature value for a specific channel in the energy stack.
      Specified by:
      calculateForChannel in class FeatureEnergyChannel
      Parameters:
      input - the FeatureCalculationInput containing the FeatureInputSingleObject
      channel - the Channel from the energy stack to calculate the feature on
      Returns:
      the calculated feature value
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException - if the calculation fails

    • getEnergyIndexGradient

      public int getEnergyIndexGradient()

    • setEnergyIndexGradient

      public void setEnergyIndexGradient​(int energyIndexGradient)