Package org.anchoranalysis.plugin.image.feature.bean.object.single.shape

Class ObjectRadiusStandardDeviation

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
org.anchoranalysis.plugin.image.feature.bean.object.single.shape.ObjectRadiusStandardDeviation
public class ObjectRadiusStandardDeviation
extends org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
Calculates the standard deviation of distances from surface voxels to the centroid of an ObjectMask.

Optionally, it can calculate the coefficient of variation instead of the standard deviation.

  • Constructor Summary

    Constructors 
    Constructor Description
    ObjectRadiusStandardDeviation()  

  • Method Summary

    Modifier and Type Method Description
    double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input)  
    boolean isCov()
    If true, returns the coefficient of variation (stdDev/mean) instead of standard deviation.
    void setCov​(boolean cov)
    If true, returns the coefficient of variation (stdDev/mean) instead of standard deviation.

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      public double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • isCov

      public boolean isCov()
      If true, returns the coefficient of variation (stdDev/mean) instead of standard deviation.

    • setCov

      public void setCov​(boolean cov)
      If true, returns the coefficient of variation (stdDev/mean) instead of standard deviation.