Package org.anchoranalysis.plugin.image.feature.bean.object.single.surface

Class SurfaceNumberVoxelsBase

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
org.anchoranalysis.plugin.image.feature.bean.object.single.surface.SurfaceNumberVoxelsBase
Direct Known Subclasses:
SurfaceNumberVoxelFaces, SurfaceNumberVoxels
public abstract class SurfaceNumberVoxelsBase
extends org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject
A base class for features that calculate the number of voxels on the surface of an object.

  • Constructor Summary

    Constructors 
    Constructor Description
    SurfaceNumberVoxelsBase()  

  • Method Summary

    Modifier and Type Method Description
    double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input)  
    protected abstract org.anchoranalysis.feature.calculate.part.CalculationPart<Integer,​org.anchoranalysis.image.feature.input.FeatureInputSingleObject> createParameters​(boolean mip, boolean suppress3d)
    Creates the calculation parameters for the surface voxel count.
    boolean isMip()
    If true, calculates the surface on a maximum intensity projection rather than the 3D object.
    boolean isSuppress3D()
    If true, suppresses 3D calculations and treats the object as 2D.
    void setMip​(boolean mip)
    If true, calculates the surface on a maximum intensity projection rather than the 3D object.
    void setSuppress3D​(boolean suppress3D)
    If true, suppresses 3D calculations and treats the object as 2D.

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      public double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • createParameters

      protected abstract org.anchoranalysis.feature.calculate.part.CalculationPart<Integer,​org.anchoranalysis.image.feature.input.FeatureInputSingleObject> createParameters​(boolean mip, boolean suppress3d)
      Creates the calculation parameters for the surface voxel count.
      Parameters:
      mip - whether to use maximum intensity projection
      suppress3d - whether to suppress 3D calculations
      Returns:
      a CalculationPart for calculating the number of surface voxels

    • isMip

      public boolean isMip()
      If true, calculates the surface on a maximum intensity projection rather than the 3D object.

    • setMip

      public void setMip​(boolean mip)
      If true, calculates the surface on a maximum intensity projection rather than the 3D object.

    • isSuppress3D

      public boolean isSuppress3D()
      If true, suppresses 3D calculations and treats the object as 2D.

    • setSuppress3D

      public void setSuppress3D​(boolean suppress3D)
      If true, suppresses 3D calculations and treats the object as 2D.