Package org.anchoranalysis.plugin.image.feature.bean.score

Class DifferenceCalculateLevelStandardDeviation

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,org.anchoranalysis.image.bean.nonbean.init.ImageInitialization>

org.anchoranalysis.image.bean.ImageBean<org.anchoranalysis.image.feature.bean.VoxelScore>

org.anchoranalysis.image.feature.bean.VoxelScore

org.anchoranalysis.plugin.image.feature.bean.score.SingleChannel

org.anchoranalysis.plugin.image.feature.bean.score.CalculateLevelBase

org.anchoranalysis.plugin.image.feature.bean.score.DifferenceCalculateLevelStandardDeviation

public class DifferenceCalculateLevelStandardDeviation
extends CalculateLevelBase

Similar to Difference but calculates the width as the standard-deviation of the histogram

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
DifferenceCalculateLevelStandardDeviation()

Method Summary

Modifier and Type	Method	Description
protected void	beforeCalcSetup(org.anchoranalysis.math.histogram.Histogram histogram, int level)	Performs setup operations before calculation.
protected double	calculateForVoxel(int voxelIntensity, int level)	Calculates a score for a single voxel based on its intensity and the threshold level.
int	getMinDifference()
double	getWidthFactor()
void	setMinDifference(int minDifference)
void	setWidthFactor(double widthFactor)

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.score.CalculateLevelBase

deriveScoreFromVoxel, getCalculateLevel, getHistogramChannelIndex, initialize, setCalculateLevel, setHistogramChannelIndex

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.score.SingleChannel

calculate, getEnergyChannelIndex, setEnergyChannelIndex

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

DifferenceCalculateLevelStandardDeviation

public DifferenceCalculateLevelStandardDeviation()

Method Details

beforeCalcSetup

protected void beforeCalcSetup(org.anchoranalysis.math.histogram.Histogram histogram, int level) throws org.anchoranalysis.core.exception.OperationFailedException

Description copied from class: CalculateLevelBase

Performs setup operations before calculation.

Specified by:

beforeCalcSetup in class CalculateLevelBase

Parameters:

histogram - the Histogram to use for setup

level - the calculated threshold level

Throws:

org.anchoranalysis.core.exception.OperationFailedException - if the setup operation fails

calculateForVoxel

protected double calculateForVoxel(int voxelIntensity, int level)

Description copied from class: CalculateLevelBase

Calculates a score for a single voxel based on its intensity and the threshold level.

Specified by:

calculateForVoxel in class CalculateLevelBase

Parameters:

voxelIntensity - the intensity of the voxel

level - the threshold level

Returns:

a score for the voxel

getMinDifference

public int getMinDifference()

setMinDifference

public void setMinDifference(int minDifference)

getWidthFactor

public double getWidthFactor()

setWidthFactor

public void setWidthFactor(double widthFactor)