Package org.anchoranalysis.plugin.image.feature.bean.shared.object

Class MaskAsSingleObject<T extends org.anchoranalysis.feature.input.FeatureInputEnergy>

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<T>
org.anchoranalysis.image.feature.bean.FeatureEnergy<T>
org.anchoranalysis.plugin.image.feature.bean.shared.object.FeatureSingleObjectFromShared<T>
org.anchoranalysis.plugin.image.feature.bean.shared.object.MaskAsSingleObject<T>
Type Parameters:
T - feature-input type that extends FeatureInputEnergy
public class MaskAsSingleObject<T extends org.anchoranalysis.feature.input.FeatureInputEnergy>
extends FeatureSingleObjectFromShared<T>
Calculates a feature, treating a mask as a single-object on the energy-stack.

This class extends FeatureSingleObjectFromShared to provide functionality for treating a mask as a single object when calculating features.

Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    MaskAsSingleObject()  

  • Method Summary

    Modifier and Type Method Description
    protected void beforeCalcWithInitialization​(org.anchoranalysis.image.bean.nonbean.init.ImageInitialization initialization)
    Performs initialization before calculation with image-specific initialization.
    protected double calc​(org.anchoranalysis.feature.calculate.cache.CalculateForChild<T> calculateForChild, org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> featureForSingleObject)
    Calculates the feature value for a single object.
    org.anchoranalysis.image.bean.provider.MaskProvider getMask()
    The provider for the mask to be treated as a single object.
    void setMask​(org.anchoranalysis.image.bean.provider.MaskProvider mask)
    The provider for the mask to be treated as a single object.

    Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.shared.object.FeatureSingleObjectFromShared

    beforeCalc, calculate, getItem, inputType, setItem

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • beforeCalcWithInitialization

      protected void beforeCalcWithInitialization​(org.anchoranalysis.image.bean.nonbean.init.ImageInitialization initialization) throws org.anchoranalysis.core.exception.InitializeException
      Description copied from class: FeatureSingleObjectFromShared
      Performs initialization before calculation with image-specific initialization.
      Specified by:
      beforeCalcWithInitialization in class FeatureSingleObjectFromShared<T extends org.anchoranalysis.feature.input.FeatureInputEnergy>
      Parameters:
      initialization - the image-specific initialization
      Throws:
      org.anchoranalysis.core.exception.InitializeException - if initialization fails

    • calc

      protected double calc​(org.anchoranalysis.feature.calculate.cache.CalculateForChild<T> calculateForChild, org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> featureForSingleObject) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Description copied from class: FeatureSingleObjectFromShared
      Calculates the feature value for a single object.
      Specified by:
      calc in class FeatureSingleObjectFromShared<T extends org.anchoranalysis.feature.input.FeatureInputEnergy>
      Parameters:
      calculateForChild - the calculation context for child features
      featureForSingleObject - the feature to calculate on a single object
      Returns:
      the calculated feature value
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException - if the calculation fails

    • getMask

      public org.anchoranalysis.image.bean.provider.MaskProvider getMask()
      The provider for the mask to be treated as a single object.

    • setMask

      public void setMask​(org.anchoranalysis.image.bean.provider.MaskProvider mask)
      The provider for the mask to be treated as a single object.