Package org.anchoranalysis.plugin.image.feature.bean.stack.intensity

Class Intensity

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputStack>
org.anchoranalysis.image.feature.bean.FeatureStack
org.anchoranalysis.plugin.image.feature.bean.stack.intensity.Intensity
public class Intensity
extends org.anchoranalysis.image.feature.bean.FeatureStack
The intensity of a particular channel of the stack, by default the mean-intensity.

Alternative statistics to the mean can be calculated via the item bean-field.

Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    Intensity()  

  • Method Summary

    Modifier and Type Method Description
    protected double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputStack> input)  
    String descriptionLong()  
    int getEnergyIndex()
    The channel that that forms the histogram.
    int getEnergyIndexMask()
    Optionally, index of another channel that masks the histogram.
    org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputHistogram> getItem()
    Feature to apply to the histogram.
    void setEnergyIndex​(int energyIndex)
    The channel that that forms the histogram.
    void setEnergyIndexMask​(int energyIndexMask)
    Optionally, index of another channel that masks the histogram.
    void setItem​(org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputHistogram> item)
    Feature to apply to the histogram.

    Methods inherited from class org.anchoranalysis.image.feature.bean.FeatureStack

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      protected double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputStack> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputStack>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • descriptionLong

      public String descriptionLong()
      Overrides:
      descriptionLong in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputStack>

    • getItem

      public org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputHistogram> getItem()
      Feature to apply to the histogram.

    • setItem

      public void setItem​(org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputHistogram> item)
      Feature to apply to the histogram.

    • getEnergyIndex

      public int getEnergyIndex()
      The channel that that forms the histogram.

    • setEnergyIndex

      public void setEnergyIndex​(int energyIndex)
      The channel that that forms the histogram.

    • getEnergyIndexMask

      public int getEnergyIndexMask()
      Optionally, index of another channel that masks the histogram. -1 disables.

    • setEnergyIndexMask

      public void setEnergyIndexMask​(int energyIndexMask)
      Optionally, index of another channel that masks the histogram. -1 disables.