Package org.anchoranalysis.plugin.image.feature.bean.stack.object

Class AsObjectMask

Object
org.anchoranalysis.bean.AnchorBean<B>
org.anchoranalysis.bean.initializable.InitializableBean<org.anchoranalysis.feature.bean.Feature<T>,​org.anchoranalysis.feature.initialization.FeatureInitialization>
org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputStack>
org.anchoranalysis.image.feature.bean.FeatureStack
org.anchoranalysis.plugin.image.feature.bean.stack.object.AsObjectMask
public class AsObjectMask
extends org.anchoranalysis.image.feature.bean.FeatureStack
Treats a channel as an object-mask, assuming binary values of 0 and 255 and calls an object-mask feature
Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    AsObjectMask()  

  • Method Summary

    Modifier and Type Method Description
    double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputStack> input)  
    int getEnergyIndex()
    The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions
    org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> getItem()  
    void setEnergyIndex​(int energyIndex)
    The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions
    void setItem​(org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> item)  

    Methods inherited from class org.anchoranalysis.image.feature.bean.FeatureStack

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • calculate

      public double calculate​(org.anchoranalysis.feature.calculate.FeatureCalculationInput<org.anchoranalysis.image.feature.input.FeatureInputStack> input) throws org.anchoranalysis.feature.calculate.FeatureCalculationException
      Specified by:
      calculate in class org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputStack>
      Throws:
      org.anchoranalysis.feature.calculate.FeatureCalculationException

    • getItem

      public org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> getItem()

    • setItem

      public void setItem​(org.anchoranalysis.feature.bean.Feature<org.anchoranalysis.image.feature.input.FeatureInputSingleObject> item)

    • getEnergyIndex

      public int getEnergyIndex()
      The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions

    • setEnergyIndex

      public void setEnergyIndex​(int energyIndex)
      The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions