Class SurfaceNumberVoxelsBase

Object
AnchorBean<Feature<FeatureInputSingleObject>>
InitializableBean<Feature<FeatureInputSingleObject>, FeatureInitialization>
Feature<FeatureInputSingleObject>
FeatureSingleObject
SurfaceNumberVoxelsBase
Direct Known Subclasses:
SurfaceNumberVoxelFaces, SurfaceNumberVoxels
public abstract class SurfaceNumberVoxelsBase extends FeatureSingleObject
A base class for features that calculate the number of voxels on the surface of an object.

  • Constructor Summary

    Constructors
    Constructor
    Description
    SurfaceNumberVoxelsBase()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    double
    calculate(FeatureCalculationInput<FeatureInputSingleObject> input)
     
    protected abstract CalculationPart<Integer, FeatureInputSingleObject>
    createParameters(boolean mip, boolean suppress3d)
    Creates the calculation parameters for the surface voxel count.
    boolean
    isMip()
    If true, calculates the surface on a maximum intensity projection rather than the 3D object.
    boolean
    isSuppress3D()
    If true, suppresses 3D calculations and treats the object as 2D.
    void
    setMip(boolean mip)
    If true, calculates the surface on a maximum intensity projection rather than the 3D object.
    void
    setSuppress3D(boolean suppress3D)
    If true, suppresses 3D calculations and treats the object as 2D.

    Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

    inputType

    Methods inherited from class org.anchoranalysis.feature.bean.Feature

    assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • SurfaceNumberVoxelsBase

      public SurfaceNumberVoxelsBase()

  • Method Details

    • calculate

      public double calculate(FeatureCalculationInput<FeatureInputSingleObject> input) throws FeatureCalculationException
      Specified by:
      calculate in class Feature<FeatureInputSingleObject>
      Throws:
      FeatureCalculationException

    • createParameters

      protected abstract CalculationPart<Integer, FeatureInputSingleObject> createParameters(boolean mip, boolean suppress3d)
      Creates the calculation parameters for the surface voxel count.
      Parameters:
      mip - whether to use maximum intensity projection
      suppress3d - whether to suppress 3D calculations
      Returns:
      a CalculationPart for calculating the number of surface voxels

    • isMip

      public boolean isMip()
      If true, calculates the surface on a maximum intensity projection rather than the 3D object.

    • setMip

      public void setMip(boolean mip)
      If true, calculates the surface on a maximum intensity projection rather than the 3D object.

    • isSuppress3D

      public boolean isSuppress3D()
      If true, suppresses 3D calculations and treats the object as 2D.

    • setSuppress3D

      public void setSuppress3D(boolean suppress3D)
      If true, suppresses 3D calculations and treats the object as 2D.