Package org.anchoranalysis.plugin.image.task.bean.format.convertstyle

Class IndependentChannels

Object
org.anchoranalysis.bean.AnchorBean<ChannelConvertStyle>
org.anchoranalysis.plugin.image.task.bean.format.convertstyle.ChannelConvertStyle
org.anchoranalysis.plugin.image.task.bean.format.convertstyle.IndependentChannels
public class IndependentChannels
extends ChannelConvertStyle
Converts each channel independently and creates a single-channeled stack from the conversion.

An identical channel-name is used to identify it among the outputted stacks.

Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    IndependentChannels()  

  • Method Summary

    Modifier and Type Method Description
    org.anchoranalysis.image.core.stack.named.NamedStacks convert​(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, org.anchoranalysis.core.log.Logger logger)
    Converts a particular set of channels.
    boolean isIgnoreMissingChannel()
    Iff true and we cannot find a channel in the file, we ignore it and carry on
    void setIgnoreMissingChannel​(boolean ignoreMissingChannel)
    Iff true and we cannot find a channel in the file, we ignore it and carry on

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • convert

      public org.anchoranalysis.image.core.stack.named.NamedStacks convert​(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, org.anchoranalysis.core.log.Logger logger) throws org.anchoranalysis.core.exception.OperationFailedException
      Description copied from class: ChannelConvertStyle
      Converts a particular set of channels.
      Specified by:
      convert in class ChannelConvertStyle
      Parameters:
      channelNames - a set of names of the channels to convert.
      channelGetter - gets a particular channel at a particular time-point.
      logger - the logger.
      Returns:
      the results of the conversion.
      Throws:
      org.anchoranalysis.core.exception.OperationFailedException - if the conversion fails to successfully complete.

    • isIgnoreMissingChannel

      public boolean isIgnoreMissingChannel()
      Iff true and we cannot find a channel in the file, we ignore it and carry on

    • setIgnoreMissingChannel

      public void setIgnoreMissingChannel​(boolean ignoreMissingChannel)
      Iff true and we cannot find a channel in the file, we ignore it and carry on