Class ImageAssignLabel<T>

Object

AnchorBean<Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>>

Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

ImageAssignLabel<T>

Type Parameters:

T - type of initialization associated with the filter.

public class ImageAssignLabel<T>
extends Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

Assigns a label to each image and copies into subdirectories for each label, and creates a labelling CSV.

The following outputs are produced:

Output Name	Default?	Description
"images"	yes	a directory where copies of input images are placed in subdirectories corresponding to their label.
"mapping"	yes	a single CSV file where each row is an image-label correspondence.
inherited from Task

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ImageAssignLabel()

Method Summary

Modifier and Type	Method	Description
void	afterAllJobsAreExecuted(SharedStateFilteredImageOutput<T> sharedState, InputOutputContext context)
SharedStateFilteredImageOutput<T>	beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<ProvidesStackInput> inputs, ParametersExperiment parameters)
OutputEnabledMutable	defaultOutputs()
void	doJobOnInput(InputBound<ProvidesStackInput, SharedStateFilteredImageOutput<T>> input)
ImageLabeller<T>	getImageLabeller()	Maps a label to an image
StackProvider	getOutputStackProvider()	If it's set, a stack is generated that is outputted into subdirectory corresponding to the groupIdentifier.
boolean	hasVeryQuickPerInputExecution()
InputTypesExpected	inputTypesExpected()
void	setImageLabeller(ImageLabeller<T> imageLabeller)	Maps a label to an image
void	setOutputStackProvider(StackProvider outputStackProvider)	If it's set, a stack is generated that is outputted into subdirectory corresponding to the groupIdentifier.

Methods inherited from class org.anchoranalysis.experiment.bean.task.Task

executeJob, isInputCompatibleWith

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ImageAssignLabel

public ImageAssignLabel()

Method Details

beforeAnyJobIsExecuted

public SharedStateFilteredImageOutput<T> beforeAnyJobIsExecuted(Outputter outputter,
 ConcurrencyPlan concurrencyPlan,
 List<ProvidesStackInput> inputs,
 ParametersExperiment parameters)
                                                         throws ExperimentExecutionException

Specified by:

beforeAnyJobIsExecuted in class Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

Throws:

ExperimentExecutionException

defaultOutputs

public OutputEnabledMutable defaultOutputs()

Overrides:

defaultOutputs in class Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

inputTypesExpected

public InputTypesExpected inputTypesExpected()

Specified by:

inputTypesExpected in class Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

doJobOnInput

public void doJobOnInput(InputBound<ProvidesStackInput, SharedStateFilteredImageOutput<T>> input)
                  throws JobExecutionException

Specified by:

doJobOnInput in class Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

Throws:

JobExecutionException

hasVeryQuickPerInputExecution

public boolean hasVeryQuickPerInputExecution()

Specified by:

hasVeryQuickPerInputExecution in class Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

afterAllJobsAreExecuted

public void afterAllJobsAreExecuted(SharedStateFilteredImageOutput<T> sharedState,
 InputOutputContext context)
                             throws ExperimentExecutionException

Specified by:

afterAllJobsAreExecuted in class Task<ProvidesStackInput, SharedStateFilteredImageOutput<T>>

Throws:

ExperimentExecutionException

getImageLabeller

public ImageLabeller<T> getImageLabeller()

Maps a label to an image

setImageLabeller

public void setImageLabeller(ImageLabeller<T> imageLabeller)

Maps a label to an image

getOutputStackProvider

public StackProvider getOutputStackProvider()

If it's set, a stack is generated that is outputted into subdirectory corresponding to the groupIdentifier.

setOutputStackProvider

public void setOutputStackProvider(StackProvider outputStackProvider)

If it's set, a stack is generated that is outputted into subdirectory corresponding to the groupIdentifier.