Class UnaryWithObjectsBase

Object
AnchorBean<ChannelProvider>
InitializableBean<ChannelProvider, ImageInitialization>
ImageBean<ChannelProvider>
BeanProviderAsStackBase<ChannelProvider, Channel>
ChannelProvider
ChannelProviderUnary
UnaryWithObjectsBase
All Implemented Interfaces:
Provider<Channel>, ProviderAsStack
Direct Known Subclasses:
IdentifyObjects, NormalizeDifferenceToMedian, NormalizeObjectIntensity, ScoreObjects
public abstract class UnaryWithObjectsBase extends ChannelProviderUnary
An abstract base class for creating a channel from an existing channel and a collection of objects.

This class extends ChannelProviderUnary to provide a framework for creating channels based on an input channel and a collection of objects. Subclasses must implement the createFromChannel method.

  • Constructor Summary

    Constructors
    Constructor
    Description
    UnaryWithObjectsBase()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    Channel
    createFromChannel(Channel channel)
     
    protected abstract Channel
    createFromChannel(Channel channel, ObjectCollection objects)
    Creates a new channel from an existing channel and a collection of objects.
    ObjectCollectionProvider
    getObjects()
    The provider for the collection of objects to be used in channel creation.
    void
    setObjects(ObjectCollectionProvider objects)
    The provider for the collection of objects to be used in channel creation.

    Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

    get, getChannel, setChannel

    Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

    getAsStack

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • UnaryWithObjectsBase

      public UnaryWithObjectsBase()

  • Method Details

    • createFromChannel

      public Channel createFromChannel(Channel channel) throws ProvisionFailedException
      Specified by:
      createFromChannel in class ChannelProviderUnary
      Throws:
      ProvisionFailedException

    • createFromChannel

      protected abstract Channel createFromChannel(Channel channel, ObjectCollection objects) throws ProvisionFailedException
      Creates a new channel from an existing channel and a collection of objects.
      Parameters:
      channel - the input Channel
      objects - the ObjectCollection to be used in channel creation
      Returns:
      a new Channel created from the input channel and objects
      Throws:
      ProvisionFailedException - if the channel creation fails

    • getObjects

      public ObjectCollectionProvider getObjects()
      The provider for the collection of objects to be used in channel creation.

    • setObjects

      public void setObjects(ObjectCollectionProvider objects)
      The provider for the collection of objects to be used in channel creation.