Class SubtractMean

Object
AnchorBean<ChannelProvider>
InitializableBean<ChannelProvider, ImageInitialization>
ImageBean<ChannelProvider>
BeanProviderAsStackBase<ChannelProvider, Channel>
ChannelProvider
ChannelProviderUnary
UnaryWithMaskBase
SubtractMean
All Implemented Interfaces:
Provider<Channel>, ProviderAsStack
public class SubtractMean extends UnaryWithMaskBase
Subtracts the mean intensity (of the entire channel or a masked portion thereof) from every voxel.

This class extends UnaryWithMaskBase to perform mean subtraction on a channel, optionally restricted to a masked region.

Author:
Owen Feehan

  • Constructor Summary

    Constructors
    Constructor
    Description
    SubtractMean()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    protected Channel
    createFromMaskedChannel(Channel channel, Mask mask)
    Creates a new Channel from the input channel and mask.
    boolean
    isSubtractFromMaskOnly()
    Whether to subtract the mean only from voxels within the mask.
    void
    setSubtractFromMaskOnly(boolean subtractFromMaskOnly)
    Whether to subtract the mean only from voxels within the mask.

    Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.mask.UnaryWithMaskBase

    createFromChannel, getMask, setMask

    Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

    get, getChannel, setChannel

    Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

    getAsStack

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • SubtractMean

      public SubtractMean()

  • Method Details

    • createFromMaskedChannel

      protected Channel createFromMaskedChannel(Channel channel, Mask mask)
      Description copied from class: UnaryWithMaskBase
      Creates a new Channel from the input channel and mask.
      Specified by:
      createFromMaskedChannel in class UnaryWithMaskBase
      Parameters:
      channel - the input Channel
      mask - the Mask to apply to the channel
      Returns:
      a new Channel created from the input channel and mask

    • isSubtractFromMaskOnly

      public boolean isSubtractFromMaskOnly()
      Whether to subtract the mean only from voxels within the mask.

      If true, only voxels within the mask are modified. If false, all voxels in the channel are modified.

    • setSubtractFromMaskOnly

      public void setSubtractFromMaskOnly(boolean subtractFromMaskOnly)
      Whether to subtract the mean only from voxels within the mask.

      If true, only voxels within the mask are modified. If false, all voxels in the channel are modified.