Class ScoreObjects

Object
AnchorBean<ChannelProvider>
InitializableBean<ChannelProvider, ImageInitialization>
ImageBean<ChannelProvider>
BeanProviderAsStackBase<ChannelProvider, Channel>
ChannelProvider
ChannelProviderUnary
UnaryWithObjectsBase
ScoreObjects
All Implemented Interfaces:
Provider<Channel>, ProviderAsStack
public class ScoreObjects extends UnaryWithObjectsBase
Creates a channel by scoring objects based on a feature calculation.

This class assigns intensity values to voxels in a new channel based on feature calculations performed on objects in the input channel.

  • Constructor Summary

    Constructors
    Constructor
    Description
    ScoreObjects()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    protected Channel
    createFromChannel(Channel channel, ObjectCollection objects)
    Creates a new channel from an existing channel and a collection of objects.
    double
    getFactor()
    Factor to multiply the feature value by before assigning it to the output channel.
    Feature<FeatureInputSingleObject>
    getFeature()
    Feature that calculates the score for an object.
    List<ChannelProvider>
    getListAdditionalChannelProviders()
    Additional channels to be included in the EnergyStack for feature calculation.
    int
    getValueNoObject()
    The value assigned to voxels that do not belong to any object.
    void
    setFactor(double factor)
    Factor to multiply the feature value by before assigning it to the output channel.
    void
    setFeature(Feature<FeatureInputSingleObject> feature)
    Feature that calculates the score for an object.
    void
    setListAdditionalChannelProviders(List<ChannelProvider> listAdditionalChannelProviders)
    Additional channels to be included in the EnergyStack for feature calculation.
    void
    setValueNoObject(int valueNoObject)
    The value assigned to voxels that do not belong to any object.

    Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.UnaryWithObjectsBase

    createFromChannel, getObjects, setObjects

    Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

    get, getChannel, setChannel

    Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

    getAsStack

    Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

    getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • ScoreObjects

      public ScoreObjects()

  • Method Details

    • createFromChannel

      protected Channel createFromChannel(Channel channel, ObjectCollection objects) throws ProvisionFailedException
      Description copied from class: UnaryWithObjectsBase
      Creates a new channel from an existing channel and a collection of objects.
      Specified by:
      createFromChannel in class UnaryWithObjectsBase
      Parameters:
      channel - the input Channel
      objects - the ObjectCollection to be used in channel creation
      Returns:
      a new Channel created from the input channel and objects
      Throws:
      ProvisionFailedException - if the channel creation fails

    • getValueNoObject

      public int getValueNoObject()
      The value assigned to voxels that do not belong to any object.

    • setValueNoObject

      public void setValueNoObject(int valueNoObject)
      The value assigned to voxels that do not belong to any object.

    • getFeature

      public Feature<FeatureInputSingleObject> getFeature()
      Feature that calculates the score for an object.

    • setFeature

      public void setFeature(Feature<FeatureInputSingleObject> feature)
      Feature that calculates the score for an object.

    • getListAdditionalChannelProviders

      public List<ChannelProvider> getListAdditionalChannelProviders()
      Additional channels to be included in the EnergyStack for feature calculation.

    • setListAdditionalChannelProviders

      public void setListAdditionalChannelProviders(List<ChannelProvider> listAdditionalChannelProviders)
      Additional channels to be included in the EnergyStack for feature calculation.

    • getFactor

      public double getFactor()
      Factor to multiply the feature value by before assigning it to the output channel.

    • setFactor

      public void setFactor(double factor)
      Factor to multiply the feature value by before assigning it to the output channel.