Package org.anchoranalysis.plugin.io.bean.stack.reader

Class ImposeResolution

Object
org.anchoranalysis.bean.AnchorBean<org.anchoranalysis.image.io.bean.stack.reader.StackReader>
org.anchoranalysis.image.io.bean.stack.reader.StackReader
org.anchoranalysis.plugin.io.bean.stack.reader.ImposeResolution
public class ImposeResolution
extends org.anchoranalysis.image.io.bean.stack.reader.StackReader
Adds an explicit Resolution to an image after it has been read.

Any existing Resolution associated with the image is replaced.

Author:
Owen Feehan

  • Constructor Summary

    Constructors 
    Constructor Description
    ImposeResolution()  

  • Method Summary

    Modifier and Type Method Description
    double getDepth()
    Physical pixel size of a voxel in z-dimension.
    double getHeight()
    Physical pixel size of a voxel in y-dimension.
    org.anchoranalysis.image.io.bean.stack.reader.StackReader getStackReader()
    Reads an image before a resolution is imposed.
    double getWidth()
    Physical pixel size of a voxel in x-dimension.
    boolean isKeepZ()
    Keep the z-resolution if it is already defined
    org.anchoranalysis.image.io.stack.input.OpenedImageFile openFile​(Path path, org.anchoranalysis.core.time.ExecutionTimeRecorder executionTimeRecorder)  
    void setDepth​(double depth)
    Physical pixel size of a voxel in z-dimension.
    void setHeight​(double height)
    Physical pixel size of a voxel in y-dimension.
    void setKeepZ​(boolean keepZ)
    Keep the z-resolution if it is already defined
    void setStackReader​(org.anchoranalysis.image.io.bean.stack.reader.StackReader stackReader)
    Reads an image before a resolution is imposed.
    void setWidth​(double width)
    Physical pixel size of a voxel in x-dimension.

    Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.StackReader

    readStack

    Methods inherited from class org.anchoranalysis.bean.AnchorBean

    checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

  • Method Details

    • openFile

      public org.anchoranalysis.image.io.stack.input.OpenedImageFile openFile​(Path path, org.anchoranalysis.core.time.ExecutionTimeRecorder executionTimeRecorder) throws org.anchoranalysis.image.io.ImageIOException
      Specified by:
      openFile in class org.anchoranalysis.image.io.bean.stack.reader.StackReader
      Throws:
      org.anchoranalysis.image.io.ImageIOException

    • getStackReader

      public org.anchoranalysis.image.io.bean.stack.reader.StackReader getStackReader()
      Reads an image before a resolution is imposed.

    • setStackReader

      public void setStackReader​(org.anchoranalysis.image.io.bean.stack.reader.StackReader stackReader)
      Reads an image before a resolution is imposed.

    • getWidth

      public double getWidth()
      Physical pixel size of a voxel in x-dimension.

    • setWidth

      public void setWidth​(double width)
      Physical pixel size of a voxel in x-dimension.

    • getHeight

      public double getHeight()
      Physical pixel size of a voxel in y-dimension.

    • setHeight

      public void setHeight​(double height)
      Physical pixel size of a voxel in y-dimension.

    • getDepth

      public double getDepth()
      Physical pixel size of a voxel in z-dimension.

    • setDepth

      public void setDepth​(double depth)
      Physical pixel size of a voxel in z-dimension.

    • isKeepZ

      public boolean isKeepZ()
      Keep the z-resolution if it is already defined

    • setKeepZ

      public void setKeepZ​(boolean keepZ)
      Keep the z-resolution if it is already defined