Package org.anchoranalysis.plugin.io.bean.task

Class SummarizeBase<T extends org.anchoranalysis.io.input.InputFromManager,S>

Object

org.anchoranalysis.bean.AnchorBean<org.anchoranalysis.experiment.bean.task.Task<T,S>>

org.anchoranalysis.experiment.bean.task.Task<T,Summarizer<S>>

org.anchoranalysis.plugin.io.bean.task.SummarizeBase<T,S>

Direct Known Subclasses:

SummarizeInputs

public abstract class SummarizeBase<T extends org.anchoranalysis.io.input.InputFromManager,S>
extends org.anchoranalysis.experiment.bean.task.Task<T,Summarizer<S>>

Constructor Summary

Constructors

Constructor	Description
SummarizeBase()

Method Summary

Modifier and Type	Method	Description
void	afterAllJobsAreExecuted(Summarizer<S> sharedState, org.anchoranalysis.io.output.outputter.InputOutputContext context)
Summarizer<S>	beforeAnyJobIsExecuted(org.anchoranalysis.io.output.outputter.Outputter outputter, org.anchoranalysis.inference.concurrency.ConcurrencyPlan concurrencyPlan, List<T> inputs, org.anchoranalysis.experiment.task.ParametersExperiment parameters)
void	doJobOnInput(org.anchoranalysis.experiment.task.InputBound<T,Summarizer<S>> input)
protected abstract S	extractObjectForSummary(T input)	Extract object for summary.
Summarizer<S>	getSummarizer()
boolean	hasVeryQuickPerInputExecution()
void	setSummarizer(Summarizer<S> summarizer)

Methods inherited from class org.anchoranalysis.experiment.bean.task.Task

defaultOutputs, executeJob, inputTypesExpected, isInputCompatibleWith

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SummarizeBase

public SummarizeBase()

Method Details

beforeAnyJobIsExecuted

public Summarizer<S> beforeAnyJobIsExecuted(org.anchoranalysis.io.output.outputter.Outputter outputter, org.anchoranalysis.inference.concurrency.ConcurrencyPlan concurrencyPlan, List<T> inputs, org.anchoranalysis.experiment.task.ParametersExperiment parameters) throws org.anchoranalysis.experiment.ExperimentExecutionException

Specified by:

beforeAnyJobIsExecuted in class org.anchoranalysis.experiment.bean.task.Task<T extends org.anchoranalysis.io.input.InputFromManager,Summarizer<S>>

Throws:

org.anchoranalysis.experiment.ExperimentExecutionException

doJobOnInput

public void doJobOnInput(org.anchoranalysis.experiment.task.InputBound<T,Summarizer<S>> input) throws org.anchoranalysis.experiment.JobExecutionException

Specified by:

doJobOnInput in class org.anchoranalysis.experiment.bean.task.Task<T extends org.anchoranalysis.io.input.InputFromManager,Summarizer<S>>

Throws:

org.anchoranalysis.experiment.JobExecutionException

afterAllJobsAreExecuted

public void afterAllJobsAreExecuted(Summarizer<S> sharedState, org.anchoranalysis.io.output.outputter.InputOutputContext context) throws org.anchoranalysis.experiment.ExperimentExecutionException

Specified by:

afterAllJobsAreExecuted in class org.anchoranalysis.experiment.bean.task.Task<T extends org.anchoranalysis.io.input.InputFromManager,Summarizer<S>>

Throws:

org.anchoranalysis.experiment.ExperimentExecutionException

hasVeryQuickPerInputExecution

public boolean hasVeryQuickPerInputExecution()

Specified by:

hasVeryQuickPerInputExecution in class org.anchoranalysis.experiment.bean.task.Task<T extends org.anchoranalysis.io.input.InputFromManager,Summarizer<S>>

extractObjectForSummary

protected abstract S extractObjectForSummary(T input)

Extract object for summary.

getSummarizer

public Summarizer<S> getSummarizer()

setSummarizer

public void setSummarizer(Summarizer<S> summarizer)