Hierarchy For All Packages

Package Hierarchies:

• org.anchoranalysis.plugin.io.bean.channel.map,
• org.anchoranalysis.plugin.io.bean.file.copy.method,
• org.anchoranalysis.plugin.io.bean.file.copy.naming,
• org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster,
• org.anchoranalysis.plugin.io.bean.file.group,
• org.anchoranalysis.plugin.io.bean.file.group.check,
• org.anchoranalysis.plugin.io.bean.file.group.parser,
• org.anchoranalysis.plugin.io.bean.file.namer,
• org.anchoranalysis.plugin.io.bean.file.namer.patternspan,
• org.anchoranalysis.plugin.io.bean.file.path,
• org.anchoranalysis.plugin.io.bean.file.path.prefixer,
• org.anchoranalysis.plugin.io.bean.file.pattern,
• org.anchoranalysis.plugin.io.bean.file.provider,
• org.anchoranalysis.plugin.io.bean.grouper,
• org.anchoranalysis.plugin.io.bean.input,
• org.anchoranalysis.plugin.io.bean.input.channel,
• org.anchoranalysis.plugin.io.bean.input.files,
• org.anchoranalysis.plugin.io.bean.input.files.provider,
• org.anchoranalysis.plugin.io.bean.input.filter,
• org.anchoranalysis.plugin.io.bean.input.stack,
• org.anchoranalysis.plugin.io.bean.metadata.header,
• org.anchoranalysis.plugin.io.bean.metadata.reader,
• org.anchoranalysis.plugin.io.bean.path.derive,
• org.anchoranalysis.plugin.io.bean.stack.reader,
• org.anchoranalysis.plugin.io.bean.stack.writer,
• org.anchoranalysis.plugin.io.bean.summarizer,
• org.anchoranalysis.plugin.io.bean.summarizer.image,
• org.anchoranalysis.plugin.io.bean.summarizer.input,
• org.anchoranalysis.plugin.io.bean.summarizer.path,
• org.anchoranalysis.plugin.io.bean.task,
• org.anchoranalysis.plugin.io.file.copy,
• org.anchoranalysis.plugin.io.input.filter,
• org.anchoranalysis.plugin.io.input.path,
• org.anchoranalysis.plugin.io.multifile,
• org.anchoranalysis.plugin.io.multifile.buffer,
• org.anchoranalysis.plugin.io.naming.interval,
• org.anchoranalysis.plugin.io.shared,
• org.anchoranalysis.plugin.io.xml

Class Hierarchy

• java.lang.Object
  • org.anchoranalysis.bean.AnchorBean<F>
    • org.anchoranalysis.image.io.bean.channel.ChannelMapCreator
      • org.anchoranalysis.plugin.io.bean.channel.map.Autoname
      • org.anchoranalysis.plugin.io.bean.channel.map.FromEntries
      • org.anchoranalysis.plugin.io.bean.channel.map.FromMetadata
      • org.anchoranalysis.plugin.io.bean.channel.map.SingleChannel
    • org.anchoranalysis.plugin.io.bean.file.group.check.CheckParsedFilePathBag
      • org.anchoranalysis.plugin.io.bean.file.group.check.AtLeastZSlices
    • org.anchoranalysis.plugin.io.bean.file.copy.method.CopyFilesMethod
      • org.anchoranalysis.plugin.io.bean.file.copy.method.Bytewise
      • org.anchoranalysis.plugin.io.bean.file.copy.method.CompressAnyTIFF
    • org.anchoranalysis.plugin.io.bean.file.copy.naming.CopyFilesNaming<T>
      • org.anchoranalysis.plugin.io.bean.file.copy.naming.Anonymize
      • org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster.ClusterByTimestamp
      • org.anchoranalysis.plugin.io.bean.file.copy.naming.CopyFilesNamingWithoutSharedState
        • org.anchoranalysis.plugin.io.bean.file.copy.naming.CopyFilesNamingOne
          • org.anchoranalysis.plugin.io.bean.file.copy.naming.RegularExpressionBase
            • org.anchoranalysis.plugin.io.bean.file.copy.naming.FilterWithRegularExpression
            • org.anchoranalysis.plugin.io.bean.file.copy.naming.SubstituteRegularExpression
          • org.anchoranalysis.plugin.io.bean.file.copy.naming.RemoveWhitespace
        • org.anchoranalysis.plugin.io.bean.file.copy.naming.OutputPrefixWithExtension
        • org.anchoranalysis.plugin.io.bean.file.copy.naming.PreserveName
    • org.anchoranalysis.io.input.bean.path.DerivePath
      • org.anchoranalysis.plugin.io.bean.path.derive.CollapseFileName
      • org.anchoranalysis.plugin.io.bean.path.derive.Constant
      • org.anchoranalysis.plugin.io.bean.path.derive.InsertRegExGroups
      • org.anchoranalysis.plugin.io.bean.path.derive.JoinRegExGroups
      • org.anchoranalysis.plugin.io.bean.path.derive.RemoveTrailingDirectory
      • org.anchoranalysis.plugin.io.bean.path.derive.Replace
      • org.anchoranalysis.plugin.io.bean.path.derive.Rooted
    • org.anchoranalysis.io.input.bean.namer.FileNamer
      • org.anchoranalysis.io.input.bean.namer.FileNamerIndependent
        • org.anchoranalysis.plugin.io.bean.file.namer.FromOutputName
        • org.anchoranalysis.plugin.io.bean.file.namer.LastDirectories
        • org.anchoranalysis.plugin.io.bean.file.namer.NormalizedPath
        • org.anchoranalysis.plugin.io.bean.file.namer.RegExMatcher
        • org.anchoranalysis.plugin.io.bean.file.namer.RelativeToDirectory
      • org.anchoranalysis.plugin.io.bean.file.namer.IfRelativeToDirectory
      • org.anchoranalysis.plugin.io.bean.file.namer.patternspan.PatternSpan
      • org.anchoranalysis.plugin.io.bean.file.namer.RemoveExtension
      • org.anchoranalysis.plugin.io.bean.file.namer.SubsetRangeIfRequested
    • org.anchoranalysis.plugin.io.bean.file.path.FilePath
      • org.anchoranalysis.plugin.io.bean.file.path.RootedFilePath
      • org.anchoranalysis.plugin.io.bean.file.path.StaticFilePath
    • org.anchoranalysis.plugin.io.bean.file.group.parser.FilePathParser
      • org.anchoranalysis.plugin.io.bean.file.group.parser.RegularExpression
    • org.anchoranalysis.io.input.bean.files.FilesProvider
      • org.anchoranalysis.io.input.bean.files.FilesProviderUnary
        • org.anchoranalysis.plugin.io.bean.input.files.provider.FilterForExistingFiles
        • org.anchoranalysis.plugin.io.bean.file.provider.Limit
        • org.anchoranalysis.plugin.io.bean.file.provider.RandomOrder
        • org.anchoranalysis.plugin.io.bean.file.provider.RemoveMatching
        • org.anchoranalysis.plugin.io.bean.file.provider.SortAlphabetically
      • org.anchoranalysis.io.input.bean.files.FilesProviderWithDirectory
        • org.anchoranalysis.io.input.bean.files.FilesProviderWithDirectoryString
          • org.anchoranalysis.plugin.io.bean.input.files.provider.DirectoryDepth
          • org.anchoranalysis.plugin.io.bean.file.provider.FileSetFromStringSet
        • org.anchoranalysis.io.input.bean.files.FilesProviderWithDirectoryUnary
          • org.anchoranalysis.plugin.io.bean.file.provider.LimitWithDirectory
          • org.anchoranalysis.plugin.io.bean.file.provider.SampleWithDirectory
          • org.anchoranalysis.plugin.io.bean.file.provider.SortAlphabeticallyWithDirectory
      • org.anchoranalysis.io.input.bean.files.FilesProviderWithoutDirectory
        • org.anchoranalysis.plugin.io.bean.file.provider.Combine
        • org.anchoranalysis.plugin.io.bean.file.provider.Rooted
    • org.anchoranalysis.io.input.bean.grouper.Grouper
      • org.anchoranalysis.io.input.bean.grouper.FromDerivePath
        • org.anchoranalysis.plugin.io.bean.grouper.RemoveLastElement
      • org.anchoranalysis.plugin.io.bean.grouper.IfGroupIndexRange
    • org.anchoranalysis.plugin.io.bean.metadata.header.HeaderFormat
      • org.anchoranalysis.plugin.io.bean.metadata.header.BMP
      • org.anchoranalysis.plugin.io.bean.metadata.header.JPEG
      • org.anchoranalysis.plugin.io.bean.metadata.header.PNG
    • org.anchoranalysis.image.io.bean.stack.metadata.reader.ImageMetadataReader
      • org.anchoranalysis.plugin.io.bean.metadata.reader.AlwaysReject
      • org.anchoranalysis.plugin.io.bean.metadata.reader.InferFromHeader
    • org.anchoranalysis.io.input.bean.InputManager<T>
      • org.anchoranalysis.plugin.io.bean.input.Concatenate<T>
      • org.anchoranalysis.plugin.io.bean.input.stack.ConvertNamedChannelsToStack
      • org.anchoranalysis.io.input.bean.InputManagerUnary<T>
        • org.anchoranalysis.plugin.io.bean.input.BranchIfDebug<T>
        • org.anchoranalysis.plugin.io.bean.input.Exclude<T>
        • org.anchoranalysis.plugin.io.bean.input.filter.FilterCSVColumn<T>
        • org.anchoranalysis.plugin.io.bean.input.filter.FilterDescriptiveName<T>
        • org.anchoranalysis.plugin.io.bean.input.filter.FilterIfDebug<T>
        • org.anchoranalysis.plugin.io.bean.input.Limit<T>
        • org.anchoranalysis.plugin.io.bean.input.LimitIfRequested<T>
        • org.anchoranalysis.plugin.io.bean.input.Shuffle<T>
        • org.anchoranalysis.plugin.io.bean.input.ShuffleIfRequested<T>
        • org.anchoranalysis.plugin.io.bean.input.SortAlphabetically<T>
      • org.anchoranalysis.image.io.bean.stack.reader.InputManagerWithStackReader<T>
        • org.anchoranalysis.plugin.io.bean.file.group.GroupFiles
        • org.anchoranalysis.plugin.io.bean.input.channel.NamedChannelsBase
          • org.anchoranalysis.plugin.io.bean.input.channel.NamedChannels
          • org.anchoranalysis.plugin.io.bean.input.channel.NamedChannelsAppend
        • org.anchoranalysis.plugin.io.bean.input.stack.Stacks
      • org.anchoranalysis.plugin.io.bean.input.files.NamedFilesBase<T>
        • org.anchoranalysis.plugin.io.bean.input.files.NamedFiles
        • org.anchoranalysis.plugin.io.bean.input.files.NamedFilesWithDirectory
    • org.anchoranalysis.io.output.bean.path.prefixer.PathPrefixer
      • org.anchoranalysis.plugin.io.bean.file.path.prefixer.HomeSubdirectory
      • org.anchoranalysis.io.output.bean.path.prefixer.PathPrefixerAvoidResolve
        • org.anchoranalysis.plugin.io.bean.file.path.prefixer.DirectoryStructure
        • org.anchoranalysis.plugin.io.bean.file.path.prefixer.FromDescriptiveName
        • org.anchoranalysis.plugin.io.bean.file.path.prefixer.IfIncrementingNumberRequested
        • org.anchoranalysis.plugin.io.bean.file.path.prefixer.LastDirectoryAsPrefix
        • org.anchoranalysis.plugin.io.bean.file.path.prefixer.PathRegEx
      • org.anchoranalysis.plugin.io.bean.file.path.prefixer.Rooted
    • org.anchoranalysis.image.io.bean.stack.reader.StackReader
      • org.anchoranalysis.plugin.io.bean.stack.reader.BranchExtension
      • org.anchoranalysis.plugin.io.bean.stack.reader.FlattenAsChannel
      • org.anchoranalysis.plugin.io.bean.stack.reader.ImposeResolution
      • org.anchoranalysis.plugin.io.bean.stack.reader.MultiFileReader
      • org.anchoranalysis.plugin.io.bean.stack.reader.ReadVoxelExtentXml
      • org.anchoranalysis.plugin.io.bean.stack.reader.RejectIfConditionXYResolution
      • org.anchoranalysis.image.io.bean.stack.reader.StackReaderOrientationCorrection
        • org.anchoranalysis.plugin.io.bean.stack.reader.RotateImageToMatchEXIFOrientation
    • org.anchoranalysis.image.io.bean.stack.writer.StackWriter
      • org.anchoranalysis.image.io.bean.stack.writer.OneOrThreeChannelsWriter
        • org.anchoranalysis.plugin.io.bean.stack.writer.ImageIOWriter
      • org.anchoranalysis.plugin.io.bean.stack.writer.StackWriterDelegateBase
        • org.anchoranalysis.plugin.io.bean.stack.writer.BranchChannels
        • org.anchoranalysis.plugin.io.bean.stack.writer.BranchStack
        • org.anchoranalysis.plugin.io.bean.stack.writer.BranchSuggestedFormat
      • org.anchoranalysis.plugin.io.bean.stack.writer.WriteResolutionXml
    • org.anchoranalysis.plugin.io.bean.summarizer.Summarizer<T>
      • org.anchoranalysis.plugin.io.bean.summarizer.SummarizerAggregate<T>
      • org.anchoranalysis.plugin.io.bean.summarizer.SummarizerCount<T>
      • org.anchoranalysis.plugin.io.bean.summarizer.image.SummarizerImageMetadata<T>
        • org.anchoranalysis.plugin.io.bean.summarizer.image.ImageSize
        • org.anchoranalysis.plugin.io.bean.summarizer.image.SummarizerImageMetadataSimple<T>
          • org.anchoranalysis.plugin.io.bean.summarizer.image.BitDepth
          • org.anchoranalysis.plugin.io.bean.summarizer.image.NumberChannels
      • org.anchoranalysis.plugin.io.bean.summarizer.input.SummarizerInputFromManager<T,S>
        • org.anchoranalysis.plugin.io.bean.summarizer.input.ExtractIdentifier<T>
        • org.anchoranalysis.plugin.io.bean.summarizer.input.ExtractIdentifierAndPath<T>
        • org.anchoranalysis.plugin.io.bean.summarizer.input.ExtractPath<T>
      • org.anchoranalysis.plugin.io.bean.summarizer.SummarizerListMultiline<T>
      • org.anchoranalysis.plugin.io.bean.summarizer.path.SummarizerPath
        • org.anchoranalysis.plugin.io.bean.summarizer.path.ExtensionCount
        • org.anchoranalysis.plugin.io.bean.summarizer.path.FilePathPattern
        • org.anchoranalysis.plugin.io.bean.summarizer.path.FileSizeStatistics
      • org.anchoranalysis.plugin.io.bean.summarizer.SummarizerSplitMoreThan<T>
    • org.anchoranalysis.experiment.bean.task.Task<T,S>
      • org.anchoranalysis.plugin.io.bean.task.CombineCSV
      • org.anchoranalysis.plugin.io.bean.task.CopyFiles<T>
      • org.anchoranalysis.plugin.io.bean.task.SummarizeBase<T,S>
        • org.anchoranalysis.plugin.io.bean.task.SummarizeInputs<T>
    • org.anchoranalysis.plugin.io.bean.file.pattern.TimestampPattern
  • org.anchoranalysis.plugin.io.shared.AnonymizeSharedState
  • org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster.ClusterIdentifier
  • org.anchoranalysis.plugin.io.file.copy.ClusterMembership
  • org.anchoranalysis.plugin.io.input.path.CopyContext<T>
  • org.anchoranalysis.plugin.io.multifile.FileDetails
  • org.anchoranalysis.plugin.io.input.filter.FilterDescriptiveNameEqualsContains
  • org.anchoranalysis.plugin.io.shared.FrequencyMap<T>
  • org.anchoranalysis.io.input.InputFromManagerDelegate<T> (implements org.anchoranalysis.io.input.InputFromManager)
    • org.anchoranalysis.plugin.io.bean.input.stack.ConvertNamedChannelsInputToStack (implements org.anchoranalysis.image.io.stack.input.StackSequenceInput)
  • org.anchoranalysis.plugin.io.multifile.IntegerRange
  • org.anchoranalysis.plugin.io.multifile.buffer.MultiBufferSized
  • org.anchoranalysis.plugin.io.shared.NumberToStringConverter
  • org.anchoranalysis.plugin.io.multifile.OpenedMultiFile (implements org.anchoranalysis.image.io.stack.input.OpenedImageFile)
  • org.anchoranalysis.plugin.io.multifile.ParsedFilePathBag (implements java.lang.Iterable<T>)
  • org.anchoranalysis.plugin.io.file.copy.PathOperations
  • org.anchoranalysis.plugin.io.shared.RecordingCounter<T>
  • org.anchoranalysis.plugin.io.xml.ResolutionAsXML
  • org.anchoranalysis.plugin.io.input.path.RootedFilePathUtilities
  • org.anchoranalysis.plugin.io.input.path.RootPathMap
  • org.anchoranalysis.plugin.io.multifile.SizeExtents
  • org.anchoranalysis.plugin.io.multifile.SortedSetChannel (implements java.lang.Comparable<T>, java.lang.Iterable<T>)
  • org.anchoranalysis.plugin.io.multifile.SortedSetSlice (implements java.lang.Comparable<T>)
  • org.anchoranalysis.plugin.io.naming.interval.TimeIntervalNamer

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • org.anchoranalysis.plugin.io.naming.interval.DateStyle
    • org.anchoranalysis.plugin.io.naming.interval.TimeStyle