Index (anchor-plugin-opencv 1.0.0 API)

A B C D E F G H I M O P R S T U V W
All Classes and Interfaces|All Packages

A

alwaysExecuteBeforeCallingLibrary() - Static method in class org.anchoranalysis.plugin.opencv.CVInit: This routine must always be executed at least once before calling any routines in the OpenCV library

B

blockUntilLoaded() - Static method in class org.anchoranalysis.plugin.opencv.CVInit: Blocks a thread until the initialization has completed.

C

calculate(FeatureCalculationInput<FeatureInputStack>) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature
canEqual(Object) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters
canValueRangeChange() - Method in class org.anchoranalysis.plugin.opencv.resizer.VoxelsResizerOpenCV
checkMisconfigured(BeanInstanceMap) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature
checkMisconfigured(BeanInstanceMap) - Method in class org.anchoranalysis.plugin.opencv.bean.stack.OpenCVReader
checkSize(Extent) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: Throws an exception if an image of size extent cannot be described by these parameters.
close() - Method in class org.anchoranalysis.plugin.opencv.segment.OpenCVModel
ColorConverterBase - Class in org.anchoranalysis.plugin.opencv.bean.color: Converts a RGB stack into another color space using OpenCV.
ColorConverterBase() - Constructor for class org.anchoranalysis.plugin.opencv.bean.color.ColorConverterBase
colorSpaceCode() - Method in class org.anchoranalysis.plugin.opencv.bean.color.ColorConverterBase: The color space conversion code to use from OpenCV, that defines the color-space to convert to.
colorSpaceCode() - Method in class org.anchoranalysis.plugin.opencv.bean.color.ConvertRGBToHSV
colorSpaceCode() - Method in class org.anchoranalysis.plugin.opencv.bean.color.ConvertRGBToLab
contoursForObject(ObjectMask) - Static method in class org.anchoranalysis.plugin.opencv.CVFindContours: Calculates the extreme outer contours from an ObjectMask as OpenCV defines contours.
ConvertFromMat - Class in org.anchoranalysis.plugin.opencv.convert: Convert from the OpenCV Mat to a Stack.
ConvertRGBToHSV - Class in org.anchoranalysis.plugin.opencv.bean.color: Converts a RGB image to the HSV color space.
ConvertRGBToHSV() - Constructor for class org.anchoranalysis.plugin.opencv.bean.color.ConvertRGBToHSV
ConvertRGBToLab - Class in org.anchoranalysis.plugin.opencv.bean.color: Converts a RGB image to the Lab color space.
ConvertRGBToLab() - Constructor for class org.anchoranalysis.plugin.opencv.bean.color.ConvertRGBToLab
ConvertToMat - Class in org.anchoranalysis.plugin.opencv.convert: Converts common image data-structures used by Anchor to the Mat class used by OpenCV.
createDescriptor(Extent) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: Creates an empty HOGDescriptor to describe an image of a particular size.
createEmptyMat(Extent, int) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Creates a Mat which contains only zero-values.
createFromStack(Stack) - Method in class org.anchoranalysis.plugin.opencv.bean.color.ColorConverterBase
createModelPool(ConcurrencyPlan, Logger) - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel
createVoxelsResizer() - Method in class org.anchoranalysis.plugin.opencv.bean.interpolate.OpenCV
CVFindContours - Class in org.anchoranalysis.plugin.opencv: Wrapper around OpenCV's findContours function.
CVInit - Class in org.anchoranalysis.plugin.opencv: Provides for initialization of the JavaCPP bridge to OpenCV.

D

deriveInput(Stack, Optional<double[]>) - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel
describeParameters() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature

E

equals(Object) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters

F

floatFromMat(Mat, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.VoxelBufferFromMat: Converts a Mat to a VoxelBuffer with voxel data-type FloatBuffer.
fromObject(ObjectMask) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Convert a ObjectMask to a Mat.
fromStack(Stack) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a Stack to a Mat.
fromVoxelBufferByte(VoxelBuffer<UnsignedByteBuffer>, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a VoxelBuffer of type UnsignedByteBuffer to a Mat.
fromVoxelBufferFloat(VoxelBuffer<FloatBuffer>, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a VoxelBuffer of type FloatBuffer to a Mat.
fromVoxelBufferShort(VoxelBuffer<UnsignedShortBuffer>, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a VoxelBuffer of type UnsignedShortBuffer to a Mat.
fromVoxelsByte(Voxels<UnsignedByteBuffer>) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a Voxels of type UnsignedByteBuffer to a Mat.
fromVoxelsFloat(Voxels<FloatBuffer>) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a Voxels of type FloatBuffer to a Mat.
fromVoxelsShort(Voxels<UnsignedShortBuffer>) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Converts a Voxels of type UnsignedShortBuffer to a Mat.

G

get() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGDescriptor
getBlockSize() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The block-size as per OpenCV implementation (identical default-size).
getBlockStride() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The block-stride as per OpenCV implementation (identical default-size).
getCellSize() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The cell-size as per OpenCV implementation (identical default-size).
getIndex() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: Which index to return from the HOG descriptor.
getInterpolator() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The interpolator to use for scaling images.
getModelBinaryPath() - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel: Relative-path to the TensorFlow model file, likely with .pb extension, relative to the models/ directory in the Anchor distribution.
getModelTextGraphPath() - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel: Relative-path to the TensorFlow model file, likely with .pb.txt extension, relative to the models/ directory in the Anchor distribution.
getNumberBins() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The number of bins in each histogram for a cell.
getParameters() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGDescriptor: Parameters used for calculating HOG
getParameters() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: Parameters used for calculating HOG.
getResizeTo() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGDescriptor: The input-image is rescaled to this width/height before calculating HOG descriptors
getResizeTo() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: The input is rescaled to this width/height before calculating HOG descriptors.
getWindowSize() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The window-size as per OpenCV implementation.

H

hashCode() - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters
HOGDescriptor - Class in org.anchoranalysis.plugin.opencv.bean.feature: Creates the entire HOG descriptor for an image.
HOGDescriptor() - Constructor for class org.anchoranalysis.plugin.opencv.bean.feature.HOGDescriptor
HOGFeature - Class in org.anchoranalysis.plugin.opencv.bean.feature: One part of a Histogram of Oriented Gradients descriptor, as applied to an image stack.
HOGFeature() - Constructor for class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature
HOGFeature(SizeXY, int) - Constructor for class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: Create with a specific size to resize to, and index.
HOGParameters - Class in org.anchoranalysis.plugin.opencv.bean.feature: Parameters for calculating a HOG Descriptor covering window-size, block-size etc.
HOGParameters() - Constructor for class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters
HOGParameters(Interpolator) - Constructor for class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: Creates with a particular Interpolator.

I

inputName() - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel

M

makeRGBStack(Stack, boolean) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertToMat: Derives a Mat representing an RGB stack.

O

OpenCV - Class in org.anchoranalysis.plugin.opencv.bean.interpolate: Interpolation using OpenCV for resizing an image.
OpenCV() - Constructor for class org.anchoranalysis.plugin.opencv.bean.interpolate.OpenCV
OpenCVModel - Class in org.anchoranalysis.plugin.opencv.segment: A model that can be used for inference using OpenCV's DNN module.
OpenCVModel(Net) - Constructor for class org.anchoranalysis.plugin.opencv.segment.OpenCVModel: Creates a new OpenCVModel instance.
OpenCVReader - Class in org.anchoranalysis.plugin.opencv.bean.stack: Reads a stack from the file-system using OpenCV.
OpenCVReader() - Constructor for class org.anchoranalysis.plugin.opencv.bean.stack.OpenCVReader
OpenCVWriter - Class in org.anchoranalysis.plugin.opencv.bean.stack: Writes a stack to the file-system using OpenCV and a specified extension.
OpenCVWriter() - Constructor for class org.anchoranalysis.plugin.opencv.bean.stack.OpenCVWriter
openFile(Path, ExecutionTimeRecorder) - Method in class org.anchoranalysis.plugin.opencv.bean.stack.OpenCVReader
org.anchoranalysis.plugin.opencv - package org.anchoranalysis.plugin.opencv: Plugins that call OpenCV.
org.anchoranalysis.plugin.opencv.bean.color - package org.anchoranalysis.plugin.opencv.bean.color: Operations involving color-spaces and OpenCV.
org.anchoranalysis.plugin.opencv.bean.feature - package org.anchoranalysis.plugin.opencv.bean.feature: Extracting features using OpenCV.
org.anchoranalysis.plugin.opencv.bean.interpolate - package org.anchoranalysis.plugin.opencv.bean.interpolate: Interpolation beans that use OpenCV.
org.anchoranalysis.plugin.opencv.bean.object.segment.stack - package org.anchoranalysis.plugin.opencv.bean.object.segment.stack: Segmentation of a Stack using OpenCV.
org.anchoranalysis.plugin.opencv.bean.stack - package org.anchoranalysis.plugin.opencv.bean.stack: Implementations of StackWriter and StackReader that involve OpenCV.
org.anchoranalysis.plugin.opencv.convert - package org.anchoranalysis.plugin.opencv.convert: Conversion to/from OpenCV data-structures.
org.anchoranalysis.plugin.opencv.resizer - package org.anchoranalysis.plugin.opencv.resizer: Interpolation non-beans that use OpenCV.
org.anchoranalysis.plugin.opencv.segment - package org.anchoranalysis.plugin.opencv.segment: Non-bean classes pertaining to segmentation.

P

performInference(Mat, String, List<String>, CheckedFunction<List<Mat>, S, OperationFailedException>) - Method in class org.anchoranalysis.plugin.opencv.segment.OpenCVModel

R

resizeByte(VoxelBuffer<UnsignedByteBuffer>, VoxelBuffer<UnsignedByteBuffer>, Extent, Extent) - Method in class org.anchoranalysis.plugin.opencv.resizer.VoxelsResizerOpenCV
resizeFloat(VoxelBuffer<FloatBuffer>, VoxelBuffer<FloatBuffer>, Extent, Extent) - Method in class org.anchoranalysis.plugin.opencv.resizer.VoxelsResizerOpenCV
resizeShort(VoxelBuffer<UnsignedShortBuffer>, VoxelBuffer<UnsignedShortBuffer>, Extent, Extent) - Method in class org.anchoranalysis.plugin.opencv.resizer.VoxelsResizerOpenCV

S

SegmentObjectsFromTensorFlowModel - Class in org.anchoranalysis.plugin.opencv.bean.object.segment.stack: Performs instance-segmentation using OpenCV's DNN module and a TensorFlow .pb SavedModel file.
SegmentObjectsFromTensorFlowModel() - Constructor for class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel
setBlockSize(SizeXY) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The block-size as per OpenCV implementation (identical default-size).
setBlockStride(SizeXY) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The block-stride as per OpenCV implementation (identical default-size).
setCellSize(SizeXY) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The cell-size as per OpenCV implementation (identical default-size).
setIndex(int) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: Which index to return from the HOG descriptor.
setInterpolator(Interpolator) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The interpolator to use for scaling images.
setModelBinaryPath(String) - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel: Relative-path to the TensorFlow model file, likely with .pb extension, relative to the models/ directory in the Anchor distribution.
setModelTextGraphPath(String) - Method in class org.anchoranalysis.plugin.opencv.bean.object.segment.stack.SegmentObjectsFromTensorFlowModel: Relative-path to the TensorFlow model file, likely with .pb.txt extension, relative to the models/ directory in the Anchor distribution.
setNumberBins(int) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The number of bins in each histogram for a cell.
setParameters(HOGParameters) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGDescriptor: Parameters used for calculating HOG
setParameters(HOGParameters) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: Parameters used for calculating HOG.
setResizeTo(SizeXY) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGDescriptor: The input-image is rescaled to this width/height before calculating HOG descriptors
setResizeTo(SizeXY) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGFeature: The input is rescaled to this width/height before calculating HOG descriptors.
setWindowSize(SizeXY) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: The window-size as per OpenCV implementation.
sizeDescriptor(Extent) - Method in class org.anchoranalysis.plugin.opencv.bean.feature.HOGParameters: Calculates the size of the descriptor will be for a given image.

T

toStack(Mat) - Static method in class org.anchoranalysis.plugin.opencv.convert.ConvertFromMat: Convert from an OpenCV Mat to a Stack.
toVoxelBuffer(Mat, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.VoxelBufferFromMat: Converts a Mat to a VoxelBuffer.

U

unsignedByteFromMat(Mat, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.VoxelBufferFromMat: Converts a Mat to a VoxelBuffer with voxel data-type UnsignedByteBuffer.
unsignedShortFromMat(Mat, Extent) - Static method in class org.anchoranalysis.plugin.opencv.convert.VoxelBufferFromMat: Converts a Mat to a VoxelBuffer with voxel data-type UnsignedShortBuffer.

V

VoxelBufferFromMat - Class in org.anchoranalysis.plugin.opencv.convert: Converts a Mat to a VoxelBuffer.
VoxelsResizerOpenCV - Class in org.anchoranalysis.plugin.opencv.resizer: Resizes VoxelBuffers using OpenCV's cv2.resize function.
VoxelsResizerOpenCV() - Constructor for class org.anchoranalysis.plugin.opencv.resizer.VoxelsResizerOpenCV

W

writeStackAfterCheck(Stack, Path) - Method in class org.anchoranalysis.plugin.opencv.bean.stack.OpenCVWriter

A B C D E F G H I M O P R S T U V W
All Classes and Interfaces|All Packages